myRT

myRT report for GCA_001250875.1_Sg_201401463_GTCCGC_L001

Download annotations/find similar RTs

Seq: CWVQ01000005.1 Shigella sonnei genome assembly Sg_201401463_GTCCGC_L001, scaffold SCcontig000005, whole genome shotgun sequence (71071 bp)
Overview 1 RT 1: 17368-24123 bp Neighborhood of RT #1 [17368, 24125] SLATT_5 RVT-UG17 phage_tail_N Collar Ail_Lom Feature: gene Location: 17368-17535 bp Feature: gene Location: 17662-18213 bp Ori: CSH29445.1 Feature: domain Description: SLATT_5 Location: 17668-18184 bp Feature: domain Description: SLATT_5 Location: 1 7668-1 81 84 bp Feature: gene Location: 18191-19561 bp Ori: CSH29459.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 18419-19025 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 841 9-1 9025 bp Feature: gene Location: 20258-23656 bp Ori: CSH29475.1 Feature: domain Description: phage_tail_N Location: 20261-20660 bp Feature: domain Description: phage_tail_N Location: 20261 -20660 bp Feature: domain Description: Collar Location: 22979-23117 bp Feature: domain Description: Collar Location: 22979-231 1 7 bp Feature: gene Location: 23721-24125 bp Ori: CSH29493.1 Gene: ompX_1 Feature: domain Description: Ail_Lom Location: 23724-24123 bp Feature: domain Description: Ail_Lom Location: 23724-241 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400), Collar (pfam07484), Ail_Lom (pfam06316)