myRT

myRT report for GCA_001250895.1_8489_2_93

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Seq: CXMK01000275.1 Shigella sonnei genome assembly 8489_2#93, scaffold ERS153605SCcontig000275, whole genome shotgun sequence (3357 bp)
Overview 1 RT 1: 860-2029 bp Neighborhood of RT #1 [860, 2034] DDE_Tnp_1 RVT-GII Feature: gene Location: 860-1000 bp Feature: gene Location: 1023-1505 bp Ori: CTC13321.1 Feature: domain Description: DDE_Tnp_1 Location: 1194-1437 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 94-1 437 bp Feature: gene Location: 1831-2034 bp Ori: CTC13331.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 939-2029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXMK01000203.1 Shigella sonnei genome assembly 8489_2#93, scaffold ERS153605SCcontig000203, whole genome shotgun sequence (5918 bp)
Overview 1 RT 1: 528-3749 bp Neighborhood of RT #1 [528, 3769] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 528-1217 bp Ori: CTC05985.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 9-1191 bp Feature: gene Location: 1232-1759 bp Ori: CTC05997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1238-1382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 38-1382 bp Feature: domain Description: GIIM Note: maturase Location: 1460-1682 bp Feature: domain Description: GIIM Note: maturase Location: 1460-1682 bp Feature: gene Location: 2048-2533 bp Ori: CTC06009.1 Feature: domain Description: COG3547 Location: 2066-2498 bp Feature: domain Description: COG3547 Location: 2 066-2 498 bp Feature: gene Location: 2789-3769 bp Ori: CTC06019.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2966-3161 bp Feature: domain Description: sopB_N Location: 2 966-3161 bp Feature: domain Description: ParB Location: 3374-3749 bp Feature: domain Description: ParB Location: 3374-3749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXMK01000211.1 Shigella sonnei genome assembly 8489_2#93, scaffold ERS153605SCcontig000211, whole genome shotgun sequence (5260 bp)
Overview 1 RT 1: 749-5045 bp Neighborhood of RT #1 [749, 5062] ushA RVT-GII Tra5 Feature: gene Location: 749-2368 bp Ori: CTC06848.1 Gene: ushA_2 Feature: domain Description: ushA Location: 764-2366 bp Feature: domain Description: ushA Location: 764-23 66 bp Feature: gene Location: 2337-2522 bp Feature: gene Location: 3701-4795 bp Ori: CTC06873.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3968-4625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 968-4625 bp Feature: gene Location: 4841-5062 bp Ori: CTC06886.1 Feature: domain Description: Tra5 Location: 4853-5045 bp Feature: domain Description: Tra5 Location: 4853 -5045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)