myRT

myRT report for GCA_001251515.1_8489_2_83

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Seq: CXME01000226.1 Shigella sonnei genome assembly 8489_2#83, scaffold ERS153595SCcontig000226, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CTB62713.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3-1 070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CTB62736.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-41 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CXME01000300.1 Shigella sonnei genome assembly 8489_2#83, scaffold ERS153595SCcontig000300, whole genome shotgun sequence (2780 bp)
Overview 1 RT 1: 1335-2509 bp Neighborhood of RT #1 [1335, 2509] RVT-GII DDE_Tnp_1 Feature: gene Location: 1335-1538 bp Ori: CTB69796.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443-1533 bp Feature: gene Location: 1864-2346 bp Ori: CTB69813.1 Feature: domain Description: DDE_Tnp_1 Location: 2035-2278 bp Feature: domain Description: DDE_Tnp_1 Location: 2 035-2 2 78 bp Feature: gene Location: 2369-2509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXME01000161.1 Shigella sonnei genome assembly 8489_2#83, scaffold ERS153595SCcontig000161, whole genome shotgun sequence (8563 bp)
Overview 1 RT 1: 521-3742 bp Neighborhood of RT #1 [521, 3762] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 521-1210 bp Ori: CTB53901.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1184 bp Feature: gene Location: 1225-1752 bp Ori: CTB53915.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1231-1375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 1-13 75 bp Feature: domain Description: GIIM Note: maturase Location: 1453-1675 bp Feature: domain Description: GIIM Note: maturase Location: 1453 -1675 bp Feature: gene Location: 2041-2526 bp Ori: CTB53930.1 Feature: domain Description: COG3547 Location: 2059-2491 bp Feature: domain Description: COG3 547 Location: 2059-2491 bp Feature: gene Location: 2782-3762 bp Ori: CTB53944.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2959-3154 bp Feature: domain Description: sopB_N Location: 2959-3 154 bp Feature: domain Description: ParB Location: 3367-3742 bp Feature: domain Description: ParB Location: 3 3 67-3 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)