myRT

myRT report for GCA_001251635.1_8290_5_8

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Seq: CXLW01000213.1 Shigella sonnei genome assembly 8290_5#8, scaffold ERS127224SCcontig000213, whole genome shotgun sequence (5348 bp)
Overview 1 RT 1: 837-5133 bp Neighborhood of RT #1 [837, 5150] ushA RVT-GII Tra5 Feature: gene Location: 837-2456 bp Ori: CTA95623.1 Gene: ushA_2 Feature: domain Description: ushA Location: 852-2454 bp Feature: domain Description: ushA Location: 852-2454 bp Feature: gene Location: 2425-2610 bp Feature: gene Location: 3789-4883 bp Ori: CTA95639.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4056-4713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4056-471 3 bp Feature: gene Location: 4929-5150 bp Ori: CTA95648.1 Feature: domain Description: Tra5 Location: 4941-5133 bp Feature: domain Description: Tra5 Location: 4941 -51 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXLW01000272.1 Shigella sonnei genome assembly 8290_5#8, scaffold ERS127224SCcontig000272, whole genome shotgun sequence (3360 bp)
Overview 1 RT 1: 1335-2509 bp Neighborhood of RT #1 [1335, 2509] RVT-GII DDE_Tnp_1 Feature: gene Location: 1335-1538 bp Ori: CTA99564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443-1533 bp Feature: gene Location: 1864-2346 bp Ori: CTA99571.1 Feature: domain Description: DDE_Tnp_1 Location: 2035-2278 bp Feature: domain Description: DDE_Tnp_1 Location: 2 035-2 2 78 bp Feature: gene Location: 2369-2509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXLW01000207.1 Shigella sonnei genome assembly 8290_5#8, scaffold ERS127224SCcontig000207, whole genome shotgun sequence (5911 bp)
Overview 1 RT 1: 521-3742 bp Neighborhood of RT #1 [521, 3762] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 521-1210 bp Ori: CTA95245.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1184 bp Feature: gene Location: 1225-1752 bp Ori: CTA95254.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1231-1375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 1-13 75 bp Feature: domain Description: GIIM Note: maturase Location: 1453-1675 bp Feature: domain Description: GIIM Note: maturase Location: 1453 -1675 bp Feature: gene Location: 2041-2526 bp Ori: CTA95261.1 Feature: domain Description: COG3547 Location: 2059-2491 bp Feature: domain Description: COG3 547 Location: 2059-2491 bp Feature: gene Location: 2782-3762 bp Ori: CTA95265.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2959-3154 bp Feature: domain Description: sopB_N Location: 2959-3 154 bp Feature: domain Description: ParB Location: 3367-3742 bp Feature: domain Description: ParB Location: 3 3 67-3 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)