myRT

myRT report for GCA_001251675.1_5236_2_4

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Seq: CXBO01000204.1 Shigella sonnei genome assembly 5236_2#4, scaffold ERS009809SCcontig000204, whole genome shotgun sequence (5404 bp)
Overview 1 RT 1: 1688-4903 bp Neighborhood of RT #1 [1688, 4929] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 1688-2668 bp Ori: CSP18223.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 1865-2060 bp Feature: domain Description: sopB_N Location: 1 865-2060 bp Feature: domain Description: ParB Location: 2273-2648 bp Feature: domain Description: ParB Location: 2273-2648 bp Feature: gene Location: 2924-3409 bp Ori: CSP18241.1 Feature: domain Description: COG3547 Location: 2942-3374 bp Feature: domain Description: COG3547 Location: 2942-3374 bp Feature: gene Location: 3698-4225 bp Ori: CSP18256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3704-3848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3704-3848 bp Feature: domain Description: GIIM Note: maturase Location: 3926-4148 bp Feature: domain Description: GIIM Note: maturase Location: 3926-41 48 bp Feature: gene Location: 4240-4929 bp Ori: CSP18271.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4441-4903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4441 -4903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXBO01000211.1 Shigella sonnei genome assembly 5236_2#4, scaffold ERS009809SCcontig000211, whole genome shotgun sequence (5284 bp)
Overview 1 RT 1: 392-5144 bp Neighborhood of RT #1 [392, 5161] ushA RVT-GII PHA02517 Feature: gene Location: 392-2011 bp Ori: CSP19293.1 Gene: ushA_2 Feature: domain Description: ushA Location: 407-2009 bp Feature: domain Description: ushA Location: 407-2 009 bp Feature: gene Location: 1980-2165 bp Feature: gene Location: 3344-4438 bp Ori: CSP19329.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3611-4268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3611-42 68 bp Feature: gene Location: 4484-5161 bp Ori: CSP19347.1 Feature: domain Description: PHA02517 Location: 4499-5144 bp Feature: domain Description: PHA02 517 Location: 4499-5144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: CXBO01000263.1 Shigella sonnei genome assembly 5236_2#4, scaffold ERS009809SCcontig000263, whole genome shotgun sequence (3216 bp)
Overview 1 RT 1: 1251-2425 bp Neighborhood of RT #1 [1251, 2425] RVT-GII DDE_Tnp_1 Feature: gene Location: 1251-1454 bp Ori: CSP26241.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 59-1449 bp Feature: gene Location: 1780-2262 bp Ori: CSP26262.1 Feature: domain Description: DDE_Tnp_1 Location: 1951-2194 bp Feature: domain Description: DDE_Tnp_1 Location: 1951-2194 bp Feature: gene Location: 2285-2425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)