myRT

myRT report for GCA_001251895.1_8290_5_3

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Seq: CXLR01000212.1 Shigella sonnei genome assembly 8290_5#3, scaffold ERS127219SCcontig000212, whole genome shotgun sequence (5242 bp)
Overview 1 RT 1: 731-5027 bp Neighborhood of RT #1 [731, 5044] ushA RVT-GII Tra5 Feature: gene Location: 731-2350 bp Ori: CTA74851.1 Gene: ushA_2 Feature: domain Description: ushA Location: 746-2348 bp Feature: domain Description: ushA Location: 746-2348 bp Feature: gene Location: 2319-2504 bp Feature: gene Location: 3683-4777 bp Ori: CTA74867.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3950-4607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3950-4607 bp Feature: gene Location: 4823-5044 bp Ori: CTA74877.1 Feature: domain Description: Tra5 Location: 4835-5027 bp Feature: domain Description: Tra5 Location: 4835-5027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXLR01000203.1 Shigella sonnei genome assembly 8290_5#3, scaffold ERS127219SCcontig000203, whole genome shotgun sequence (5958 bp)
Overview 1 RT 1: 2219-5434 bp Neighborhood of RT #1 [2219, 5460] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2219-3199 bp Ori: CTA74383.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2396-2591 bp Feature: domain Description: sopB_N Location: 2 396-2 591 bp Feature: domain Description: ParB Location: 2804-3179 bp Feature: domain Description: ParB Location: 2 804-3179 bp Feature: gene Location: 3455-3940 bp Ori: CTA74388.1 Feature: domain Description: COG3547 Location: 3473-3905 bp Feature: domain Description: COG3547 Location: 3473-3905 bp Feature: gene Location: 4229-4756 bp Ori: CTA74392.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4235-4379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 35-4379 bp Feature: domain Description: GIIM Note: maturase Location: 4457-4679 bp Feature: domain Description: GIIM Note: maturase Location: 4457-4679 bp Feature: gene Location: 4771-5460 bp Ori: CTA74403.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4972-5434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4972 -5434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXLR01000267.1 Shigella sonnei genome assembly 8290_5#3, scaffold ERS127219SCcontig000267, whole genome shotgun sequence (3346 bp)
Overview 1 RT 1: 1321-2495 bp Neighborhood of RT #1 [1321, 2495] RVT-GII DDE_Tnp_1 Feature: gene Location: 1321-1524 bp Ori: CTA77925.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1429-1519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1429-1519 bp Feature: gene Location: 1850-2332 bp Ori: CTA77934.1 Feature: domain Description: DDE_Tnp_1 Location: 2021-2264 bp Feature: domain Description: DDE_Tnp_1 Location: 2021-2264 bp Feature: gene Location: 2355-2495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)