myRT

myRT report for GCA_001252155.1_12830_1_35

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Seq: CWWU01000194.1 Shigella sonnei genome assembly 12830_1#35, scaffold ERS428539SCcontig000194, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 2150-5365 bp Neighborhood of RT #1 [2150, 5391] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2150-3130 bp Ori: CSJ23240.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 2735-31 1 0 bp Feature: gene Location: 3386-3871 bp Ori: CSJ23241.1 Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 4160-4687 bp Ori: CSJ23242.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 66-431 0 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-461 0 bp Feature: gene Location: 4702-5391 bp Ori: CSJ23243.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWWU01000254.1 Shigella sonnei genome assembly 12830_1#35, scaffold ERS428539SCcontig000254, whole genome shotgun sequence (3424 bp)
Overview 1 RT 1: 880-2049 bp Neighborhood of RT #1 [880, 2054] DDE_Tnp_1 RVT-GII Feature: gene Location: 880-1020 bp Feature: gene Location: 1043-1525 bp Ori: CSJ23532.1 Feature: domain Description: DDE_Tnp_1 Location: 1214-1457 bp Feature: domain Description: DDE_Tnp_1 Location: 12 14-1457 bp Feature: gene Location: 1851-2054 bp Ori: CSJ23533.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2 049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CWWU01000204.1 Shigella sonnei genome assembly 12830_1#35, scaffold ERS428539SCcontig000204, whole genome shotgun sequence (5149 bp)
Overview 1 RT 1: 267-4311 bp Neighborhood of RT #1 [267, 4313] RVT-GII ushA Feature: gene Location: 267-1361 bp Ori: CSJ23295.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 4-1191 bp Feature: gene Location: 2540-2725 bp Feature: gene Location: 2694-4313 bp Ori: CSJ23297.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2709-4311 bp Feature: domain Description: ushA Location: 2709-43 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)