myRT

myRT report for GCA_001252335.1_12844_1_55

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Seq: CWXF01000271.1 Shigella sonnei genome assembly 12844_1#55, scaffold ERS428559SCcontig000271, whole genome shotgun sequence (3219 bp)
Overview 1 RT 1: 664-1833 bp Neighborhood of RT #1 [664, 1838] DDE_Tnp_1 RVT-GII Feature: gene Location: 664-804 bp Feature: gene Location: 827-1309 bp Ori: CSK52991.1 Feature: domain Description: DDE_Tnp_1 Location: 998-1241 bp Feature: domain Description: DDE_Tnp_1 Location: 998-1 241 bp Feature: gene Location: 1635-1838 bp Ori: CSK53007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1743-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 743-1 833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CWXF01000215.1 Shigella sonnei genome assembly 12844_1#55, scaffold ERS428559SCcontig000215, whole genome shotgun sequence (4846 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSK45204.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSK45237.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2 588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CWXF01000199.1 Shigella sonnei genome assembly 12844_1#55, scaffold ERS428559SCcontig000199, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSK42619.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: gene Location: 1268-1795 bp Ori: CSK42633.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 2084-2569 bp Ori: CSK42649.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3 547 Location: 2102-253 4 bp Feature: gene Location: 2825-3805 bp Ori: CSK42665.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3 002-3 197 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 3 410-3 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)