myRT

myRT report for GCA_001252395.1_12971_8_61

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Seq: CWZP01000257.1 Shigella sonnei genome assembly 12971_8#61, scaffold ERS432292SCcontig000257, whole genome shotgun sequence (3341 bp)
Overview 1 RT 1: 1308-2482 bp Neighborhood of RT #1 [1308, 2482] RVT-GII DDE_Tnp_1 Feature: gene Location: 1308-1511 bp Ori: CSN15283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416-1506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 6-1 506 bp Feature: gene Location: 1837-2319 bp Ori: CSN15304.1 Feature: domain Description: DDE_Tnp_1 Location: 2008-2251 bp Feature: domain Description: DDE_Tnp_1 Location: 2008-2251 bp Feature: gene Location: 2342-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWZP01000190.1 Shigella sonnei genome assembly 12971_8#61, scaffold ERS432292SCcontig000190, whole genome shotgun sequence (5944 bp)
Overview 1 RT 1: 554-3775 bp Neighborhood of RT #1 [554, 3795] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 554-1243 bp Ori: CSN03353.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-1217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-12 17 bp Feature: gene Location: 1258-1785 bp Ori: CSN03377.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 64-1408 bp Feature: domain Description: GIIM Note: maturase Location: 1486-1708 bp Feature: domain Description: GIIM Note: maturase Location: 1486-1708 bp Feature: gene Location: 2074-2559 bp Ori: CSN03403.1 Feature: domain Description: COG3547 Location: 2092-2524 bp Feature: domain Description: COG3547 Location: 2 092 -2 52 4 bp Feature: gene Location: 2815-3795 bp Ori: CSN03424.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2992-3187 bp Feature: domain Description: sopB_N Location: 2 992 -3187 bp Feature: domain Description: ParB Location: 3400-3775 bp Feature: domain Description: ParB Location: 3400-3775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWZP01000211.1 Shigella sonnei genome assembly 12971_8#61, scaffold ERS432292SCcontig000211, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 547-4423 bp Neighborhood of RT #1 [547, 4593] ushA RVT-GII Feature: gene Location: 547-2166 bp Ori: CSN07525.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562-2164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSN07571.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 766-4423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII