myRT

myRT report for GCA_001252415.1_12971_8_47

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Seq: CWZA01000261.1 Shigella sonnei genome assembly 12971_8#47, scaffold ERS432275SCcontig000261, whole genome shotgun sequence (3311 bp)
Overview 1 RT 1: 841-2010 bp Neighborhood of RT #1 [841, 2015] DDE_Tnp_1 RVT-GII Feature: gene Location: 841-981 bp Feature: gene Location: 1004-1486 bp Ori: CSM73796.1 Feature: domain Description: DDE_Tnp_1 Location: 1175-1418 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 75-1 41 8 bp Feature: gene Location: 1812-2015 bp Ori: CSM73829.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1920-2010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 920-201 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CWZA01000209.1 Shigella sonnei genome assembly 12971_8#47, scaffold ERS432275SCcontig000209, whole genome shotgun sequence (5046 bp)
Overview 1 RT 1: 547-4843 bp Neighborhood of RT #1 [547, 4860] ushA RVT-GII Tra5 Feature: gene Location: 547-2166 bp Ori: CSM60810.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562 -2 164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSM60879.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-442 3 bp Feature: gene Location: 4639-4860 bp Ori: CSM60909.1 Feature: domain Description: Tra5 Location: 4651-4843 bp Feature: domain Description: Tra5 Location: 4651-4843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CWZA01000205.1 Shigella sonnei genome assembly 12971_8#47, scaffold ERS432275SCcontig000205, whole genome shotgun sequence (5424 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSM59649.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: gene Location: 1268-1795 bp Ori: CSM59685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 2084-2569 bp Ori: CSM59719.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3 547 Location: 2102-253 4 bp Feature: gene Location: 2825-3805 bp Ori: CSM59748.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3 002-3 197 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 3 410-3 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)