myRT

myRT report for GCA_001252455.1_12971_8_54

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Seq: CWZK01000219.1 Shigella sonnei genome assembly 12971_8#54, scaffold ERS432285SCcontig000219, whole genome shotgun sequence (4886 bp)
Overview 1 RT 1: 1596-4093 bp Neighborhood of RT #1 [1596, 4263] ushA RVT-GII GIIM RVT-GII Feature: gene Location: 1596-2330 bp Feature: domain Description: ushA Location: 1599-2328 bp Feature: domain Description: ushA Location: 1 599-2328 bp Feature: gene Location: 2299-2484 bp Feature: gene Location: 2844-3401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2856-3024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2856-3024 bp Feature: domain Description: GIIM Note: maturase Location: 3108-3324 bp Feature: domain Description: GIIM Note: maturase Location: 31 08-3324 bp Feature: gene Location: 3721-4263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3724-4093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3724-4093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, GIIM (pfam08388)

Seq: CWZK01000202.1 Shigella sonnei genome assembly 12971_8#54, scaffold ERS432285SCcontig000202, whole genome shotgun sequence (6007 bp)
Overview 1 RT 1: 2150-5418 bp Neighborhood of RT #1 [2150, 5444] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2150-3130 bp Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 2 32 7-2 52 2 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 2 735-3110 bp Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 4213-4740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4219-4363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 19-4363 bp Feature: domain Description: GIIM Note: maturase Location: 4441-4663 bp Feature: domain Description: GIIM Note: maturase Location: 4441-4663 bp Feature: gene Location: 4755-5444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4956-5418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4956-5418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)