myRT

myRT report for GCA_001252655.1_5417_2_12

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Seq: CXEI01000216.1 Shigella sonnei genome assembly 5417_2#12, scaffold ERS008185SCcontig000216, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSS41292.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3-1 070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSS41331.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-41 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CXEI01000156.1 Shigella sonnei genome assembly 5417_2#12, scaffold ERS008185SCcontig000156, whole genome shotgun sequence (8982 bp)
Overview 1 RT 1: 4323-8317 bp Neighborhood of RT #1 [4323, 8317] Zn_Tnp_IS1 HTH_Tnp_IS1 HTH_23 HTH_33 DDE_3 RVT-GII DDE_Tnp_1 Feature: gene Location: 4323-4595 bp Ori: CSS25864.1 Feature: domain Description: Zn_Tnp_IS1 Location: 4326-4428 bp Feature: domain Description: Zn_Tnp_IS1 Location: 432 6-442 8 bp Feature: domain Description: HTH_Tnp_IS1 Location: 4449-4584 bp Feature: domain Description: HTH_Tnp_IS1 Location: 4449-4584 bp Feature: gene Location: 4789-5820 bp Ori: CSS25890.1 Feature: domain Description: HTH_23 Location: 4867-5008 bp Feature: domain Description: HTH_2 3 Location: 4867-5008 bp Feature: domain Description: HTH_33 Location: 5113-5260 bp Feature: domain Description: HTH_33 Location: 5113-52 60 bp Feature: domain Description: DDE_3 Location: 5320-5737 bp Feature: domain Description: DDE_3 Location: 532 0-5737 bp Feature: gene Location: 7143-7346 bp Ori: CSS25914.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7251-7341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 51-7341 bp Feature: gene Location: 7672-8154 bp Ori: CSS25944.1 Feature: domain Description: DDE_Tnp_1 Location: 7843-8086 bp Feature: domain Description: DDE_Tnp_1 Location: 7843-8086 bp Feature: gene Location: 8177-8317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXEI01000208.1 Shigella sonnei genome assembly 5417_2#12, scaffold ERS008185SCcontig000208, whole genome shotgun sequence (5352 bp)
Overview 1 RT 1: 492-3713 bp Neighborhood of RT #1 [492, 3733] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 492-1181 bp Ori: CSS39652.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693 -1155 bp Feature: gene Location: 1196-1723 bp Ori: CSS39679.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202-1346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202-13 46 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1646 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1646 bp Feature: gene Location: 2012-2497 bp Ori: CSS39699.1 Feature: domain Description: COG3547 Location: 2030-2462 bp Feature: domain Description: COG3 547 Location: 203 0-2462 bp Feature: gene Location: 2753-3733 bp Ori: CSS39720.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2930-3125 bp Feature: domain Description: sopB_N Location: 293 0-3 125 bp Feature: domain Description: ParB Location: 3338-3713 bp Feature: domain Description: ParB Location: 3 3 3 8-3 713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)