myRT

myRT report for GCA_001252695.1_H14030023601

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Seq: CWSW01000204.1 Shigella sonnei genome assembly H14030023601, scaffold SCcontig000204, whole genome shotgun sequence (5389 bp)
Overview 1 RT 1: 1625-4840 bp Neighborhood of RT #1 [1625, 4866] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 1625-2605 bp Ori: CSE53939.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 1802-1997 bp Feature: domain Description: sopB_N Location: 1 802-1 997 bp Feature: domain Description: ParB Location: 2210-2585 bp Feature: domain Description: ParB Location: 221 0-2585 bp Feature: gene Location: 2861-3346 bp Ori: CSE53946.1 Feature: domain Description: COG3547 Location: 2879-3311 bp Feature: domain Description: COG3547 Location: 2879-331 1 bp Feature: gene Location: 3635-4162 bp Ori: CSE53951.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641-3785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641 -3785 bp Feature: domain Description: GIIM Note: maturase Location: 3863-4085 bp Feature: domain Description: GIIM Note: maturase Location: 3863-4085 bp Feature: gene Location: 4177-4866 bp Ori: CSE53958.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4378-4840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4378-4840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWSW01000194.1 Shigella sonnei genome assembly H14030023601, scaffold SCcontig000194, whole genome shotgun sequence (6329 bp)
Overview 1 RT 1: 665-5470 bp Neighborhood of RT #1 [665, 5470] HTH_23 HTH_33 DDE_3 RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 665-1909 bp Feature: gene Location: 1942-2973 bp Ori: CSE53452.1 Feature: domain Description: HTH_23 Location: 2020-2161 bp Feature: domain Description: HTH_2 3 Location: 2 02 0-2 161 bp Feature: domain Description: HTH_33 Location: 2266-2413 bp Feature: domain Description: HTH_33 Location: 2 2 66-2 413 bp Feature: domain Description: DDE_3 Location: 2473-2890 bp Feature: domain Description: DDE_3 Location: 2 473-2 890 bp Feature: gene Location: 3879-4235 bp Ori: CSE53459.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3888-4209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3888-42 09 bp Feature: gene Location: 4296-4499 bp Ori: CSE53466.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4404-4494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4404-4494 bp Feature: gene Location: 4591-5307 bp Ori: CSE53474.1 Feature: domain Description: DDE_Tnp_1 Location: 4597-5239 bp Feature: domain Description: DDE_Tnp_1 Location: 4597-52 39 bp Feature: gene Location: 5330-5470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWSW01000220.1 Shigella sonnei genome assembly H14030023601, scaffold SCcontig000220, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSE54749.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 -1070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSE54762.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)