myRT

myRT report for GCA_001252755.1_12830_1_41

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Seq: CWWW01000256.1 Shigella sonnei genome assembly 12830_1#41, scaffold ERS428545SCcontig000256, whole genome shotgun sequence (3420 bp)
Overview 1 RT 1: 1367-2541 bp Neighborhood of RT #1 [1367, 2541] RVT-GII DDE_Tnp_1 Feature: gene Location: 1367-1570 bp Ori: CSJ63768.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1475-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 475-1 565 bp Feature: gene Location: 1896-2378 bp Ori: CSJ63780.1 Feature: domain Description: DDE_Tnp_1 Location: 2067-2310 bp Feature: domain Description: DDE_Tnp_1 Location: 2067-231 0 bp Feature: gene Location: 2401-2541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWWW01000206.1 Shigella sonnei genome assembly 12830_1#41, scaffold ERS428545SCcontig000206, whole genome shotgun sequence (5149 bp)
Overview 1 RT 1: 267-4311 bp Neighborhood of RT #1 [267, 4313] RVT-GII ushA Feature: gene Location: 267-1361 bp Ori: CSJ57936.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: gene Location: 2540-2725 bp Feature: gene Location: 2694-4313 bp Ori: CSJ57961.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2709-4311 bp Feature: domain Description: ushA Location: 2 709-4311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CWWW01000193.1 Shigella sonnei genome assembly 12830_1#41, scaffold ERS428545SCcontig000193, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 2150-5365 bp Neighborhood of RT #1 [2150, 5391] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2150-3130 bp Ori: CSJ56182.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 23 27-2522 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 273 5-3 110 bp Feature: gene Location: 3386-3871 bp Ori: CSJ56203.1 Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3 547 Location: 3 404-3 83 6 bp Feature: gene Location: 4160-4687 bp Ori: CSJ56218.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-43 10 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 43 88-4610 bp Feature: gene Location: 4702-5391 bp Ori: CSJ56236.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903 -53 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)