myRT

myRT report for GCA_001252975.1_8290_5_15

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Seq: CXLT01000268.1 Shigella sonnei genome assembly 8290_5#15, scaffold ERS127231SCcontig000268, whole genome shotgun sequence (4398 bp)
Overview 1 RT 1: 1349-2523 bp Neighborhood of RT #1 [1349, 2523] RVT-GII DDE_Tnp_1 Feature: gene Location: 1349-1552 bp Ori: CTB02799.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 457-1 547 bp Feature: gene Location: 1878-2360 bp Ori: CTB02810.1 Feature: domain Description: DDE_Tnp_1 Location: 2049-2292 bp Feature: domain Description: DDE_Tnp_1 Location: 2049-2292 bp Feature: gene Location: 2383-2523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXLT01000213.1 Shigella sonnei genome assembly 8290_5#15, scaffold ERS127231SCcontig000213, whole genome shotgun sequence (5348 bp)
Overview 1 RT 1: 837-5133 bp Neighborhood of RT #1 [837, 5150] ushA RVT-GII Tra5 Feature: gene Location: 837-2456 bp Ori: CTA97900.1 Gene: ushA_2 Feature: domain Description: ushA Location: 852-2454 bp Feature: domain Description: ushA Location: 852 -2 454 bp Feature: gene Location: 2425-2610 bp Feature: gene Location: 3789-4883 bp Ori: CTA97921.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4056-4713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4056-4713 bp Feature: gene Location: 4929-5150 bp Ori: CTA97933.1 Feature: domain Description: Tra5 Location: 4941-5133 bp Feature: domain Description: Tra5 Location: 4941-5133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXLT01000205.1 Shigella sonnei genome assembly 8290_5#15, scaffold ERS127231SCcontig000205, whole genome shotgun sequence (5938 bp)
Overview 1 RT 1: 2134-5349 bp Neighborhood of RT #1 [2134, 5375] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2134-3114 bp Ori: CTA97118.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2311-2506 bp Feature: domain Description: sopB_N Location: 23 11-2506 bp Feature: domain Description: ParB Location: 2719-3094 bp Feature: domain Description: ParB Location: 2719-3 094 bp Feature: gene Location: 3370-3855 bp Ori: CTA97129.1 Feature: domain Description: COG3547 Location: 3388-3820 bp Feature: domain Description: COG3 547 Location: 3 3 88-3 820 bp Feature: gene Location: 4144-4671 bp Ori: CTA97141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4150-4294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4150-4294 bp Feature: domain Description: GIIM Note: maturase Location: 4372-4594 bp Feature: domain Description: GIIM Note: maturase Location: 43 72-4594 bp Feature: gene Location: 4686-5375 bp Ori: CTA97154.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4887-5349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4887-53 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)