myRT

myRT report for GCA_001252995.1_5236_3_6

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Seq: CXCO01000264.1 Shigella sonnei genome assembly 5236_3#6, scaffold ERS009823SCcontig000264, whole genome shotgun sequence (3218 bp)
Overview 1 RT 1: 1255-2429 bp Neighborhood of RT #1 [1255, 2429] RVT-GII DDE_Tnp_1 Feature: gene Location: 1255-1458 bp Ori: CSP89956.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1363-1453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 363-1 453 bp Feature: gene Location: 1784-2266 bp Ori: CSP89964.1 Feature: domain Description: DDE_Tnp_1 Location: 1955-2198 bp Feature: domain Description: DDE_Tnp_1 Location: 1 955-21 98 bp Feature: gene Location: 2289-2429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXCO01000195.1 Shigella sonnei genome assembly 5236_3#6, scaffold ERS009823SCcontig000195, whole genome shotgun sequence (5770 bp)
Overview 1 RT 1: 2060-5275 bp Neighborhood of RT #1 [2060, 5301] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2060-3040 bp Ori: CSP86324.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2237-2432 bp Feature: domain Description: sopB_N Location: 2 2 37-2 432 bp Feature: domain Description: ParB Location: 2645-3020 bp Feature: domain Description: ParB Location: 2 645-302 0 bp Feature: gene Location: 3296-3781 bp Ori: CSP86331.1 Feature: domain Description: COG3547 Location: 3314-3746 bp Feature: domain Description: COG3547 Location: 3314-3746 bp Feature: gene Location: 4070-4597 bp Ori: CSP86338.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4076-4220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4076-42 2 0 bp Feature: domain Description: GIIM Note: maturase Location: 4298-4520 bp Feature: domain Description: GIIM Note: maturase Location: 42 98-452 0 bp Feature: gene Location: 4612-5301 bp Ori: CSP86347.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4813-5275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4813-52 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXCO01000209.1 Shigella sonnei genome assembly 5236_3#6, scaffold ERS009823SCcontig000209, whole genome shotgun sequence (5592 bp)
Overview 1 RT 1: 547-5299 bp Neighborhood of RT #1 [547, 5316] ushA RVT-GII PHA02517 Feature: gene Location: 547-2166 bp Ori: CSP87168.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562-2164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSP87183.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 766-4423 bp Feature: gene Location: 4639-5316 bp Ori: CSP87188.1 Feature: domain Description: PHA02517 Location: 4654-5299 bp Feature: domain Description: PHA02517 Location: 4654-5299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)