myRT

myRT report for GCA_001253075.1_8290_4_96

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Seq: CXLK01000226.1 Shigella sonnei genome assembly 8290_4#96, scaffold ERS127216SCcontig000226, whole genome shotgun sequence (7154 bp)
Overview 1 RT 1: 1326-2500 bp Neighborhood of RT #1 [1326, 2500] RVT-GII DDE_Tnp_1 Feature: gene Location: 1326-1529 bp Ori: CTA39238.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1434-1524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 434-1 524 bp Feature: gene Location: 1855-2337 bp Ori: CTA39243.1 Feature: domain Description: DDE_Tnp_1 Location: 2026-2269 bp Feature: domain Description: DDE_Tnp_1 Location: 2026-2269 bp Feature: gene Location: 2360-2500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXLK01000206.1 Shigella sonnei genome assembly 8290_4#96, scaffold ERS127216SCcontig000206, whole genome shotgun sequence (5244 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CTA38328.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 2 11-403 bp Feature: gene Location: 466-1560 bp Ori: CTA38332.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CTA38341.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2 908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXLK01000198.1 Shigella sonnei genome assembly 8290_4#96, scaffold ERS127216SCcontig000198, whole genome shotgun sequence (5916 bp)
Overview 1 RT 1: 526-3747 bp Neighborhood of RT #1 [526, 3767] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 526-1215 bp Ori: CTA37938.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727-1189 bp Feature: gene Location: 1230-1757 bp Ori: CTA37943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 6-13 80 bp Feature: domain Description: GIIM Note: maturase Location: 1458-1680 bp Feature: domain Description: GIIM Note: maturase Location: 1458-1680 bp Feature: gene Location: 2046-2531 bp Ori: CTA37948.1 Feature: domain Description: COG3547 Location: 2064-2496 bp Feature: domain Description: COG3 547 Location: 2064-2496 bp Feature: gene Location: 2787-3767 bp Ori: CTA37952.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2964-3159 bp Feature: domain Description: sopB_N Location: 2964-3 159 bp Feature: domain Description: ParB Location: 3372-3747 bp Feature: domain Description: ParB Location: 3 3 72-3 747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)