myRT

myRT report for GCA_001253595.1_12971_8_66

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Seq: CXAA01000206.1 Shigella sonnei genome assembly 12971_8#66, scaffold ERS432297SCcontig000206, whole genome shotgun sequence (5861 bp)
Overview 1 RT 1: 893-5347 bp Neighborhood of RT #1 [893, 5373] HTH_54 BcsQ sopB_N ParB RVT-GII GIIM RVT-GII Feature: gene Location: 893-2092 bp Ori: CSN54691.1 Gene: parA_2 Feature: domain Description: HTH_54 Location: 935-1208 bp Feature: domain Description: HTH_54 Location: 935-1 208 bp Feature: domain Description: BcsQ Location: 1223-2069 bp Feature: domain Description: BcsQ Location: 1 223-2069 bp Feature: gene Location: 2092-3072 bp Ori: CSN54705.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2269-2464 bp Feature: domain Description: sopB_N Location: 2269-2464 bp Feature: domain Description: ParB Location: 2677-3052 bp Feature: domain Description: ParB Location: 2677-3052 bp Feature: gene Location: 4142-4669 bp Ori: CSN54713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4148-4292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 48-4292 bp Feature: domain Description: GIIM Note: maturase Location: 4370-4592 bp Feature: domain Description: GIIM Note: maturase Location: 4370-4592 bp Feature: gene Location: 4684-5373 bp Ori: CSN54722.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4885-5347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4885-5347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_54 (pfam18607), BcsQ (COG1192), sopB_N (cd16394), ParB (smart00470), RVT-GII, GIIM (pfam08388)

Seq: CXAA01000109.1 Shigella sonnei genome assembly 12971_8#66, scaffold ERS432297SCcontig000109, whole genome shotgun sequence (15055 bp)
Overview 1 RT 1: 10554-14840 bp Neighborhood of RT #1 [10554, 14857] ushA RVT-GII Tra5 Feature: gene Location: 10554-12173 bp Ori: CSN37263.1 Gene: ushA_2 Feature: domain Description: ushA Location: 10569-12171 bp Feature: domain Description: ushA Location: 10569-12 171 bp Feature: gene Location: 12142-12327 bp Feature: gene Location: 13496-14590 bp Ori: CSN37286.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13763-14420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13763-1442 0 bp Feature: gene Location: 14636-14857 bp Ori: CSN37301.1 Feature: domain Description: Tra5 Location: 14648-14840 bp Feature: domain Description: Tra5 Location: 14648-14840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXAA01000287.1 Shigella sonnei genome assembly 12971_8#66, scaffold ERS432297SCcontig000287, whole genome shotgun sequence (2585 bp)
Overview 1 RT 1: 841-2010 bp Neighborhood of RT #1 [841, 2015] DDE_Tnp_1 RVT-GII Feature: gene Location: 841-981 bp Feature: gene Location: 1004-1486 bp Ori: CSN60558.1 Feature: domain Description: DDE_Tnp_1 Location: 1175-1418 bp Feature: domain Description: DDE_Tnp_1 Location: 1175-1418 bp Feature: gene Location: 1812-2015 bp Ori: CSN60564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1920-2010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1920-2010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII