myRT

myRT report for GCA_001253675.1_5417_3_2

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Seq: CXEU01000266.1 Shigella sonnei genome assembly 5417_3#2, scaffold ERS008187SCcontig000266, whole genome shotgun sequence (3282 bp)
Overview 1 RT 1: 814-1983 bp Neighborhood of RT #1 [814, 1988] DDE_Tnp_1 RVT-GII Feature: gene Location: 814-954 bp Feature: gene Location: 977-1459 bp Ori: CSS85688.1 Feature: domain Description: DDE_Tnp_1 Location: 1148-1391 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 48-1 391 bp Feature: gene Location: 1785-1988 bp Ori: CSS85712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 893-1 983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXEU01000160.1 Shigella sonnei genome assembly 5417_3#2, scaffold ERS008187SCcontig000160, whole genome shotgun sequence (8185 bp)
Overview 1 RT 1: 2097-7781 bp Neighborhood of RT #1 [2097, 7831] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII COG4584 PRK09183 Feature: gene Location: 2097-3077 bp Ori: CSS64402.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2274-2469 bp Feature: domain Description: sopB_N Location: 2 2 74-2 469 bp Feature: domain Description: ParB Location: 2682-3057 bp Feature: domain Description: ParB Location: 2 682 -3057 bp Feature: gene Location: 3333-3818 bp Ori: CSS64425.1 Feature: domain Description: COG3547 Location: 3351-3783 bp Feature: domain Description: COG3547 Location: 3351-3783 bp Feature: gene Location: 4107-4634 bp Ori: CSS64447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113-4257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113-42 57 bp Feature: domain Description: GIIM Note: maturase Location: 4335-4557 bp Feature: domain Description: GIIM Note: maturase Location: 4335-4557 bp Feature: gene Location: 4649-5338 bp Ori: CSS64472.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850-5312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850-5312 bp Feature: gene Location: 5862-7034 bp Ori: CSS64498.1 Feature: domain Description: COG4584 Location: 5865-6702 bp Feature: domain Description: COG4584 Location: 5865-6702 bp Feature: gene Location: 7034-7831 bp Ori: CSS64525.1 Feature: domain Description: PRK09183 Location: 7046-7781 bp Feature: domain Description: PRK09183 Location: 7046-7781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional)

Seq: CXEU01000218.1 Shigella sonnei genome assembly 5417_3#2, scaffold ERS008187SCcontig000218, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSS77056.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 -1070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSS77110.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)