myRT

myRT report for GCA_001253975.1_5236_1_12

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Seq: CXBI01000230.1 Shigella sonnei genome assembly 5236_1#12, scaffold ERS009805SCcontig000230, whole genome shotgun sequence (4703 bp)
Overview 1 RT 1: 547-4423 bp Neighborhood of RT #1 [547, 4593] ushA RVT-GII Feature: gene Location: 547-2166 bp Ori: CSO57925.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562-21 64 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSO57936.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII

Seq: CXBI01000332.1 Shigella sonnei genome assembly 5236_1#12, scaffold ERS009805SCcontig000332, whole genome shotgun sequence (1301 bp)
Overview 1 RT 1: 476-1139 bp Neighborhood of RT #1 [476, 1165] RVT-GII Feature: gene Location: 476-1165 bp Ori: CSO60814.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CXBI01000277.1 Shigella sonnei genome assembly 5236_1#12, scaffold ERS009805SCcontig000277, whole genome shotgun sequence (3233 bp)
Overview 1 RT 1: 801-1970 bp Neighborhood of RT #1 [801, 1975] DDE_Tnp_1 RVT-GII Feature: gene Location: 801-941 bp Feature: gene Location: 964-1446 bp Ori: CSO59320.1 Feature: domain Description: DDE_Tnp_1 Location: 1135-1378 bp Feature: domain Description: DDE_Tnp_1 Location: 113 5-13 78 bp Feature: gene Location: 1772-1975 bp Ori: CSO59324.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880-1970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880-1970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII