myRT

myRT report for GCA_001254015.1_H14088028501

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Seq: CWTF01000210.1 Shigella sonnei genome assembly H14088028501, scaffold SCcontig000210, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 547-4423 bp Neighborhood of RT #1 [547, 4593] ushA RVT-GII Feature: gene Location: 547-2166 bp Ori: CSF34628.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562-21 64 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSF34664.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII

Seq: CWTF01000264.1 Shigella sonnei genome assembly H14088028501, scaffold SCcontig000264, whole genome shotgun sequence (3329 bp)
Overview 1 RT 1: 889-2480 bp Neighborhood of RT #1 [889, 2480] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 889-1245 bp Ori: CSF42036.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-12 19 bp Feature: gene Location: 1306-1509 bp Ori: CSF42059.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1504 bp Feature: gene Location: 1601-2317 bp Ori: CSF42072.1 Feature: domain Description: DDE_Tnp_1 Location: 1607-2249 bp Feature: domain Description: DDE_Tnp_1 Location: 1607-2 2 49 bp Feature: gene Location: 2340-2480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWTF01000192.1 Shigella sonnei genome assembly H14088028501, scaffold SCcontig000192, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 2088-5303 bp Neighborhood of RT #1 [2088, 5329] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2088-3068 bp Ori: CSF32050.1 Gene: sopB Feature: domain Description: sopB_N Location: 2265-2460 bp Feature: domain Description: sopB_N Location: 2265-2460 bp Feature: domain Description: ParB Location: 2673-3048 bp Feature: domain Description: ParB Location: 2673 -3 048 bp Feature: gene Location: 3324-3809 bp Ori: CSF32069.1 Feature: domain Description: COG3547 Location: 3342-3774 bp Feature: domain Description: COG3 547 Location: 3 3 42-3 774 bp Feature: gene Location: 4098-4625 bp Ori: CSF32084.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4104-4248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4104-4248 bp Feature: domain Description: GIIM Note: maturase Location: 4326-4548 bp Feature: domain Description: GIIM Note: maturase Location: 43 26-4548 bp Feature: gene Location: 4640-5329 bp Ori: CSF32099.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4841-5303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4841-53 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)