myRT

myRT report for GCA_001254075.1_12971_8_57

Download annotations/find similar RTs

Seq: CWZT01000290.1 Shigella sonnei genome assembly 12971_8#57, scaffold ERS432288SCcontig000290, whole genome shotgun sequence (2746 bp)
Overview 1 RT 1: 1301-2475 bp Neighborhood of RT #1 [1301, 2475] RVT-GII DDE_Tnp_1 Feature: gene Location: 1301-1504 bp Ori: CSN51245.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1409-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 409-1 499 bp Feature: gene Location: 1830-2312 bp Ori: CSN51253.1 Feature: domain Description: DDE_Tnp_1 Location: 2001-2244 bp Feature: domain Description: DDE_Tnp_1 Location: 2001 -2244 bp Feature: gene Location: 2335-2475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWZT01000209.1 Shigella sonnei genome assembly 12971_8#57, scaffold ERS432288SCcontig000209, whole genome shotgun sequence (5413 bp)
Overview 1 RT 1: 548-3769 bp Neighborhood of RT #1 [548, 3789] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 548-1237 bp Ori: CSN42991.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-12 11 bp Feature: gene Location: 1252-1779 bp Ori: CSN42999.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 58-1402 bp Feature: domain Description: GIIM Note: maturase Location: 1480-1702 bp Feature: domain Description: GIIM Note: maturase Location: 1480-1702 bp Feature: gene Location: 2068-2553 bp Ori: CSN43014.1 Feature: domain Description: COG3547 Location: 2086-2518 bp Feature: domain Description: COG3547 Location: 2 086-2 518 bp Feature: gene Location: 2809-3789 bp Ori: CSN43023.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2986-3181 bp Feature: domain Description: sopB_N Location: 2 986-3181 bp Feature: domain Description: ParB Location: 3394-3769 bp Feature: domain Description: ParB Location: 3394-3769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWZT01000220.1 Shigella sonnei genome assembly 12971_8#57, scaffold ERS432288SCcontig000220, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 547-4423 bp Neighborhood of RT #1 [547, 4593] ushA RVT-GII Feature: gene Location: 547-2166 bp Ori: CSN44381.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562-2164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSN44409.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 766-4423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII