myRT

myRT report for GCA_001254235.1_8290_5_11

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Seq: CXLP01000204.1 Shigella sonnei genome assembly 8290_5#11, scaffold ERS127227SCcontig000204, whole genome shotgun sequence (5960 bp)
Overview 1 RT 1: 497-3718 bp Neighborhood of RT #1 [497, 3738] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 497-1186 bp Ori: CTA65837.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698-1160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698-1 1 60 bp Feature: gene Location: 1201-1728 bp Ori: CTA65842.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1207-1351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 207-1 351 bp Feature: domain Description: GIIM Note: maturase Location: 1429-1651 bp Feature: domain Description: GIIM Note: maturase Location: 1 429-1 651 bp Feature: gene Location: 2017-2502 bp Ori: CTA65848.1 Feature: domain Description: COG3547 Location: 2035-2467 bp Feature: domain Description: COG3547 Location: 2035-2467 bp Feature: gene Location: 2758-3738 bp Ori: CTA65853.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2935-3130 bp Feature: domain Description: sopB_N Location: 2935-31 30 bp Feature: domain Description: ParB Location: 3343-3718 bp Feature: domain Description: ParB Location: 3343-371 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXLP01000279.1 Shigella sonnei genome assembly 8290_5#11, scaffold ERS127227SCcontig000279, whole genome shotgun sequence (3339 bp)
Overview 1 RT 1: 1306-2480 bp Neighborhood of RT #1 [1306, 2480] RVT-GII DDE_Tnp_1 Feature: gene Location: 1306-1509 bp Ori: CTA69664.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1504 bp Feature: gene Location: 1835-2317 bp Ori: CTA69670.1 Feature: domain Description: DDE_Tnp_1 Location: 2006-2249 bp Feature: domain Description: DDE_Tnp_1 Location: 2 006-2 2 49 bp Feature: gene Location: 2340-2480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXLP01000216.1 Shigella sonnei genome assembly 8290_5#11, scaffold ERS127227SCcontig000216, whole genome shotgun sequence (5348 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CTA66575.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 211-403 bp Feature: gene Location: 466-1560 bp Ori: CTA66582.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 3 -13 90 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CTA66597.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)