myRT

myRT report for GCA_001254755.1_9870_6_39

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Seq: CXND01000228.1 Shigella sonnei genome assembly 9870_6#39, scaffold ERS222005SCcontig000228, whole genome shotgun sequence (6832 bp)
Overview 1 RT 1: 4343-5512 bp Neighborhood of RT #1 [4343, 5517] DDE_Tnp_1 RVT-GII Feature: gene Location: 4343-4483 bp Feature: gene Location: 4506-4988 bp Ori: CTC56810.1 Feature: domain Description: DDE_Tnp_1 Location: 4677-4920 bp Feature: domain Description: DDE_Tnp_1 Location: 4677-4920 bp Feature: gene Location: 5314-5517 bp Ori: CTC56816.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5422-5512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5422-551 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXND01000211.1 Shigella sonnei genome assembly 9870_6#39, scaffold ERS222005SCcontig000211, whole genome shotgun sequence (5266 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CTC56028.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 2 11-403 bp Feature: gene Location: 466-1560 bp Ori: CTC56035.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CTC56046.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2 908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXND01000202.1 Shigella sonnei genome assembly 9870_6#39, scaffold ERS222005SCcontig000202, whole genome shotgun sequence (6029 bp)
Overview 1 RT 1: 522-3743 bp Neighborhood of RT #1 [522, 3763] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 522-1211 bp Ori: CTC55642.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723-1185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723 -1185 bp Feature: gene Location: 1226-1753 bp Ori: CTC55650.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1232-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 2-13 76 bp Feature: domain Description: GIIM Note: maturase Location: 1454-1676 bp Feature: domain Description: GIIM Note: maturase Location: 1454-1676 bp Feature: gene Location: 2042-2527 bp Ori: CTC55656.1 Feature: domain Description: COG3547 Location: 2060-2492 bp Feature: domain Description: COG3 547 Location: 2060-2492 bp Feature: gene Location: 2783-3763 bp Ori: CTC55661.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2960-3155 bp Feature: domain Description: sopB_N Location: 2960-3 155 bp Feature: domain Description: ParB Location: 3368-3743 bp Feature: domain Description: ParB Location: 3 3 68-3 743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)