myRT

myRT report for GCA_001254875.1_12971_8_56

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Seq: CWZM01000222.1 Shigella sonnei genome assembly 12971_8#56, scaffold ERS432287SCcontig000222, whole genome shotgun sequence (4734 bp)
Overview 1 RT 1: 543-4419 bp Neighborhood of RT #1 [543, 4589] ushA RVT-GII Feature: gene Location: 543-2162 bp Ori: CSN10696.1 Gene: ushA_2 Feature: domain Description: ushA Location: 558-2160 bp Feature: domain Description: ushA Location: 558-21 60 bp Feature: gene Location: 2131-2316 bp Feature: gene Location: 3495-4589 bp Ori: CSN10738.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3762-4419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3762-441 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII

Seq: CWZM01000209.1 Shigella sonnei genome assembly 12971_8#56, scaffold ERS432287SCcontig000209, whole genome shotgun sequence (5371 bp)
Overview 1 RT 1: 1625-4840 bp Neighborhood of RT #1 [1625, 4866] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 1625-2605 bp Ori: CSN08315.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 1802-1997 bp Feature: domain Description: sopB_N Location: 1802 -1997 bp Feature: domain Description: ParB Location: 2210-2585 bp Feature: domain Description: ParB Location: 2 2 10-2 585 bp Feature: gene Location: 2861-3346 bp Ori: CSN08341.1 Feature: domain Description: COG3547 Location: 2879-3311 bp Feature: domain Description: COG3547 Location: 2 879-3311 bp Feature: gene Location: 3635-4162 bp Ori: CSN08364.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641-3785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641-3785 bp Feature: domain Description: GIIM Note: maturase Location: 3863-4085 bp Feature: domain Description: GIIM Note: maturase Location: 3863-4085 bp Feature: gene Location: 4177-4866 bp Ori: CSN08393.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4378-4840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4378-4840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWZM01000285.1 Shigella sonnei genome assembly 12971_8#56, scaffold ERS432287SCcontig000285, whole genome shotgun sequence (2755 bp)
Overview 1 RT 1: 1310-2484 bp Neighborhood of RT #1 [1310, 2484] RVT-GII DDE_Tnp_1 Feature: gene Location: 1310-1513 bp Ori: CSN20761.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1418-1508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1418-1508 bp Feature: gene Location: 1839-2321 bp Ori: CSN20778.1 Feature: domain Description: DDE_Tnp_1 Location: 2010-2253 bp Feature: domain Description: DDE_Tnp_1 Location: 2010-2253 bp Feature: gene Location: 2344-2484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)