myRT

myRT report for GCA_001255255.1_12971_8_65

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Seq: CXAC01000197.1 Shigella sonnei genome assembly 12971_8#65, scaffold ERS432296SCcontig000197, whole genome shotgun sequence (5985 bp)
Overview 1 RT 1: 526-3747 bp Neighborhood of RT #1 [526, 3767] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 526-1215 bp Ori: CSN68049.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727-1 1 89 bp Feature: gene Location: 1230-1757 bp Ori: CSN68055.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 236-1 380 bp Feature: domain Description: GIIM Note: maturase Location: 1458-1680 bp Feature: domain Description: GIIM Note: maturase Location: 1 458-1 680 bp Feature: gene Location: 2046-2531 bp Ori: CSN68059.1 Feature: domain Description: COG3547 Location: 2064-2496 bp Feature: domain Description: COG3547 Location: 2064-2496 bp Feature: gene Location: 2787-3767 bp Ori: CSN68063.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2964-3159 bp Feature: domain Description: sopB_N Location: 2964-31 59 bp Feature: domain Description: ParB Location: 3372-3747 bp Feature: domain Description: ParB Location: 3372-3747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXAC01000221.1 Shigella sonnei genome assembly 12971_8#65, scaffold ERS432296SCcontig000221, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSN69230.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSN69235.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2 588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CXAC01000295.1 Shigella sonnei genome assembly 12971_8#65, scaffold ERS432296SCcontig000295, whole genome shotgun sequence (2761 bp)
Overview 1 RT 1: 272-1441 bp Neighborhood of RT #1 [272, 1446] DDE_Tnp_1 RVT-GII Feature: gene Location: 272-412 bp Feature: gene Location: 435-917 bp Ori: CSN71566.1 Feature: domain Description: DDE_Tnp_1 Location: 606-849 bp Feature: domain Description: DDE_Tnp_1 Location: 606-849 bp Feature: gene Location: 1243-1446 bp Ori: CSN71572.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 51-1441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII