myRT

myRT report for GCA_001255335.1_8489_2_94

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Seq: CXML01000068.1 Shigella sonnei genome assembly 8489_2#94, scaffold ERS153606SCcontig000068, whole genome shotgun sequence (22406 bp)
Overview 1 RT 1: 18228-22226 bp Neighborhood of RT #1 [18228, 22246] autotrans_barl PHA02517 RVT-GII GIIM rve PRK08181 Feature: gene Location: 18228-18797 bp Ori: CTB76394.1 Gene: espC Feature: domain Description: autotrans_barl Location: 18309-18744 bp Feature: domain Description: autotrans_barl Location: 1 8309-1 8744 bp Feature: gene Location: 18800-19246 bp Ori: CTB76415.1 Feature: domain Description: PHA02517 Location: 18803-19244 bp Feature: domain Description: PHA0251 7 Location: 1 8803-1 9244 bp Feature: gene Location: 19363-20226 bp Ori: CTB76434.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19384-19708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9384-1 9708 bp Feature: domain Description: GIIM Note: maturase Location: 19783-20002 bp Feature: domain Description: GIIM Note: maturase Location: 1 9783-20002 bp Feature: gene Location: 20349-21494 bp Ori: CTB76453.1 Feature: domain Description: rve Location: 20367-20760 bp Feature: domain Description: rve Location: 20367-20760 bp Feature: gene Location: 21491-22246 bp Ori: CTB76471.1 Feature: domain Description: PRK08181 Location: 21515-22226 bp Feature: domain Description: PRK081 81 Location: 21 51 5-22226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), rve (pfam00665), PRK08181 (transposase; Validated)

Seq: CXML01000210.1 Shigella sonnei genome assembly 8489_2#94, scaffold ERS153606SCcontig000210, whole genome shotgun sequence (5385 bp)
Overview 1 RT 1: 520-3741 bp Neighborhood of RT #1 [520, 3761] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 520-1209 bp Ori: CTC12252.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 1-1183 bp Feature: gene Location: 1224-1751 bp Ori: CTC12278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1230-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 30-1374 bp Feature: domain Description: GIIM Note: maturase Location: 1452-1674 bp Feature: domain Description: GIIM Note: maturase Location: 1452 -1674 bp Feature: gene Location: 2040-2525 bp Ori: CTC12291.1 Feature: domain Description: COG3547 Location: 2058-2490 bp Feature: domain Description: COG3547 Location: 2 058-2 490 bp Feature: gene Location: 2781-3761 bp Ori: CTC12304.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2958-3153 bp Feature: domain Description: sopB_N Location: 2 958-3153 bp Feature: domain Description: ParB Location: 3366-3741 bp Feature: domain Description: ParB Location: 3366-3741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXML01000224.1 Shigella sonnei genome assembly 8489_2#94, scaffold ERS153606SCcontig000224, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 547-4423 bp Neighborhood of RT #1 [547, 4593] ushA RVT-GII Feature: gene Location: 547-2166 bp Ori: CTC14089.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562-2164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CTC14119.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 766-4423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII

Seq: CXML01000288.1 Shigella sonnei genome assembly 8489_2#94, scaffold ERS153606SCcontig000288, whole genome shotgun sequence (2781 bp)
Overview 1 RT 1: 1336-2510 bp Neighborhood of RT #1 [1336, 2510] RVT-GII DDE_Tnp_1 Feature: gene Location: 1336-1539 bp Ori: CTC22694.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1444-1534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 4 4 -1534 bp Feature: gene Location: 1865-2347 bp Ori: CTC22704.1 Feature: domain Description: DDE_Tnp_1 Location: 2036-2279 bp Feature: domain Description: DDE_Tnp_1 Location: 2036-2279 bp Feature: gene Location: 2370-2510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)