myRT

myRT report for GCA_001255375.1_H14090035501

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Seq: CWTN01000212.1 Shigella sonnei genome assembly H14090035501, scaffold SCcontig000212, whole genome shotgun sequence (5576 bp)
Overview 1 RT 1: 2448-5361 bp Neighborhood of RT #1 [2448, 5378] ushA RVT-GII Tra5 Feature: gene Location: 2448-2672 bp Feature: domain Description: ushA Location: 2454-2670 bp Feature: domain Description: ushA Location: 2454-2670 bp Feature: gene Location: 2641-2826 bp Feature: gene Location: 4005-4541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4011-4371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 1 -4371 bp Feature: gene Location: 5157-5378 bp Feature: domain Description: Tra5 Location: 5169-5361 bp Feature: domain Description: Tra5 Location: 51 69-5361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CWTN01000186.1 Shigella sonnei genome assembly H14090035501, scaffold SCcontig000186, whole genome shotgun sequence (7139 bp)
Overview 1 RT 1: 886-1635 bp Neighborhood of RT #1 [886, 1712] RVT-GII RVT-GII GIIM Feature: gene Location: 886-1170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889-1144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889-1144 bp Feature: gene Location: 1185-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1191-1335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1191-1335 bp Feature: domain Description: GIIM Note: maturase Location: 1413-1635 bp Feature: domain Description: GIIM Note: maturase Location: 1413-1635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)