myRT

myRT report for GCA_001255395.1_8290_5_6

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Seq: CXLV01000200.1 Shigella sonnei genome assembly 8290_5#6, scaffold ERS127222SCcontig000200, whole genome shotgun sequence (5930 bp)
Overview 1 RT 1: 540-3761 bp Neighborhood of RT #1 [540, 3781] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 540-1229 bp Ori: CTA89938.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 -1 203 bp Feature: gene Location: 1244-1771 bp Ori: CTA89946.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1250-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 250-1 394 bp Feature: domain Description: GIIM Note: maturase Location: 1472-1694 bp Feature: domain Description: GIIM Note: maturase Location: 1 472-1 694 bp Feature: gene Location: 2060-2545 bp Ori: CTA89954.1 Feature: domain Description: COG3547 Location: 2078-2510 bp Feature: domain Description: COG3547 Location: 2078-251 0 bp Feature: gene Location: 2801-3781 bp Ori: CTA89963.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2978-3173 bp Feature: domain Description: sopB_N Location: 2978-31 73 bp Feature: domain Description: ParB Location: 3386-3761 bp Feature: domain Description: ParB Location: 3386-3761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXLV01000268.1 Shigella sonnei genome assembly 8290_5#6, scaffold ERS127222SCcontig000268, whole genome shotgun sequence (3347 bp)
Overview 1 RT 1: 1320-2494 bp Neighborhood of RT #1 [1320, 2494] RVT-GII DDE_Tnp_1 Feature: gene Location: 1320-1523 bp Ori: CTA94458.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1428-1518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 8-1518 bp Feature: gene Location: 1849-2331 bp Ori: CTA94465.1 Feature: domain Description: DDE_Tnp_1 Location: 2020-2263 bp Feature: domain Description: DDE_Tnp_1 Location: 2 02 0-2 2 63 bp Feature: gene Location: 2354-2494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXLV01000212.1 Shigella sonnei genome assembly 8290_5#6, scaffold ERS127222SCcontig000212, whole genome shotgun sequence (5058 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CTA90871.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 211-403 bp Feature: gene Location: 466-1560 bp Ori: CTA90877.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 3 -13 90 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CTA90889.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)