myRT

myRT report for GCA_001255475.1_8290_5_7

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Seq: CXLX01000202.1 Shigella sonnei genome assembly 8290_5#7, scaffold ERS127223SCcontig000202, whole genome shotgun sequence (5933 bp)
Overview 1 RT 1: 543-3764 bp Neighborhood of RT #1 [543, 3784] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 543-1232 bp Ori: CTB10018.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 744-1206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 744-1 206 bp Feature: gene Location: 1247-1774 bp Ori: CTB10048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1253-1397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 253-1 397 bp Feature: domain Description: GIIM Note: maturase Location: 1475-1697 bp Feature: domain Description: GIIM Note: maturase Location: 1 475-1 697 bp Feature: gene Location: 2063-2548 bp Ori: CTB10076.1 Feature: domain Description: COG3547 Location: 2081-2513 bp Feature: domain Description: COG3547 Location: 2081 -251 3 bp Feature: gene Location: 2804-3784 bp Ori: CTB10093.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2981-3176 bp Feature: domain Description: sopB_N Location: 2981 -31 76 bp Feature: domain Description: ParB Location: 3389-3764 bp Feature: domain Description: ParB Location: 3389-3764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXLX01000208.1 Shigella sonnei genome assembly 8290_5#7, scaffold ERS127223SCcontig000208, whole genome shotgun sequence (5280 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CTB10665.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 2 11-403 bp Feature: gene Location: 466-1560 bp Ori: CTB10680.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CTB10720.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2 908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXLX01000262.1 Shigella sonnei genome assembly 8290_5#7, scaffold ERS127223SCcontig000262, whole genome shotgun sequence (5351 bp)
Overview 1 RT 1: 2857-4026 bp Neighborhood of RT #1 [2857, 4031] DDE_Tnp_1 RVT-GII Feature: gene Location: 2857-2997 bp Feature: gene Location: 3020-3502 bp Ori: CTB16351.1 Feature: domain Description: DDE_Tnp_1 Location: 3191-3434 bp Feature: domain Description: DDE_Tnp_1 Location: 3 191-3 43 4 bp Feature: gene Location: 3828-4031 bp Ori: CTB16367.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3936-4026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 6-4026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII