myRT

myRT report for GCA_001255535.1_5417_2_8

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Seq: CXES01000265.1 Shigella sonnei genome assembly 5417_2#8, scaffold ERS008181SCcontig000265, whole genome shotgun sequence (3265 bp)
Overview 1 RT 1: 1278-2452 bp Neighborhood of RT #1 [1278, 2452] RVT-GII DDE_Tnp_1 Feature: gene Location: 1278-1481 bp Ori: CSS83091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386-1476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 386-1 476 bp Feature: gene Location: 1807-2289 bp Ori: CSS83116.1 Feature: domain Description: DDE_Tnp_1 Location: 1978-2221 bp Feature: domain Description: DDE_Tnp_1 Location: 1 978-2221 bp Feature: gene Location: 2312-2452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXES01000196.1 Shigella sonnei genome assembly 5417_2#8, scaffold ERS008181SCcontig000196, whole genome shotgun sequence (5788 bp)
Overview 1 RT 1: 476-3697 bp Neighborhood of RT #1 [476, 3717] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 476-1165 bp Ori: CSS70843.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1139 bp Feature: gene Location: 1180-1707 bp Ori: CSS70864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1186-1330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1186-1330 bp Feature: domain Description: GIIM Note: maturase Location: 1408-1630 bp Feature: domain Description: GIIM Note: maturase Location: 1408-1630 bp Feature: gene Location: 1996-2481 bp Ori: CSS70885.1 Feature: domain Description: COG3547 Location: 2014-2446 bp Feature: domain Description: COG3547 Location: 2 014-2 446 bp Feature: gene Location: 2737-3717 bp Ori: CSS70900.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2914-3109 bp Feature: domain Description: sopB_N Location: 2 914-3109 bp Feature: domain Description: ParB Location: 3322-3697 bp Feature: domain Description: ParB Location: 332 2 -3697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXES01000215.1 Shigella sonnei genome assembly 5417_2#8, scaffold ERS008181SCcontig000215, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 547-4423 bp Neighborhood of RT #1 [547, 4593] ushA RVT-GII Feature: gene Location: 547-2166 bp Ori: CSS74426.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562-2164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSS74461.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 766-4423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII