myRT

myRT report for GCA_001255555.1_H14052014601

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Seq: CWSV01000187.1 Shigella sonnei genome assembly H14052014601, scaffold SCcontig000187, whole genome shotgun sequence (5921 bp)
Overview 1 RT 1: 2159-5374 bp Neighborhood of RT #1 [2159, 5400] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2159-3139 bp Ori: CSE51007.1 Gene: sopB Feature: domain Description: sopB_N Location: 2336-2531 bp Feature: domain Description: sopB_N Location: 2336-2531 bp Feature: domain Description: ParB Location: 2744-3119 bp Feature: domain Description: ParB Location: 2744-31 1 9 bp Feature: gene Location: 3395-3880 bp Ori: CSE51015.1 Feature: domain Description: COG3547 Location: 3413-3845 bp Feature: domain Description: COG3547 Location: 341 3-3845 bp Feature: gene Location: 4169-4696 bp Ori: CSE51020.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 75-431 9 bp Feature: domain Description: GIIM Note: maturase Location: 4397-4619 bp Feature: domain Description: GIIM Note: maturase Location: 4397-461 9 bp Feature: gene Location: 4711-5400 bp Ori: CSE51026.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4912-5374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 2-5374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWSV01000243.1 Shigella sonnei genome assembly H14052014601, scaffold SCcontig000243, whole genome shotgun sequence (3349 bp)
Overview 1 RT 1: 899-2490 bp Neighborhood of RT #1 [899, 2490] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 899-1255 bp Ori: CSE53675.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-12 2 9 bp Feature: gene Location: 1316-1519 bp Ori: CSE53682.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-1514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 4-1514 bp Feature: gene Location: 1611-2327 bp Ori: CSE53693.1 Feature: domain Description: DDE_Tnp_1 Location: 1617-2259 bp Feature: domain Description: DDE_Tnp_1 Location: 1617-2 2 59 bp Feature: gene Location: 2350-2490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWSV01000150.1 Shigella sonnei genome assembly H14052014601, scaffold SCcontig000150, whole genome shotgun sequence (9205 bp)
Overview 1 RT 1: 5676-9002 bp Neighborhood of RT #1 [5676, 9019] InsE RVT-GII Tra5 Feature: gene Location: 5676-5975 bp Ori: CSE48716.1 Feature: domain Description: InsE Location: 5703-5970 bp Feature: domain Description: InsE Location: 5703 -5970 bp Feature: gene Location: 6152-6304 bp Feature: gene Location: 7658-8752 bp Ori: CSE48726.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7925-8582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7925-8582 bp Feature: gene Location: 8798-9019 bp Ori: CSE48732.1 Feature: domain Description: Tra5 Location: 8810-9002 bp Feature: domain Description: Tra5 Location: 8810-9002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, Tra5 (COG2801)