myRT

myRT report for GCA_001255575.1_5174_7_5

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Seq: CWSG01000023.1 Vibrio cholerae genome assembly 5174_7#5, scaffold ERS013246SCcontig000023, whole genome shotgun sequence (5151 bp)
Overview 1 RT 1: 665-4836 bp Neighborhood of RT #1 [665, 4836] Nudix_Hydrolase_7 RVT-UG14 Feature: gene Location: 665-1102 bp Ori: CSE16842.1 Feature: domain Description: Nudix_Hydrolase_7 Location: 677-1070 bp Feature: domain Description: Nudix_Hydrolase_7 Location: 677-1 070 bp Feature: gene Location: 1323-1610 bp Feature: gene Location: 1751-3316 bp Ori: CSE16865.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 2186-2663 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 21 86-2663 bp Feature: gene Location: 3452-4012 bp Feature: gene Location: 4162-4836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nudix_Hydrolase_7 (cd04664), RVT-UG14

Seq: CWSG01000002.1 Vibrio cholerae genome assembly 5174_7#5, scaffold ERS013246SCcontig000002, whole genome shotgun sequence (770673 bp)
Overview 1 RT 1: 123416-128651 bp Neighborhood of RT #1 [123416, 128677] TIGR02646 COG3950 RVT-Retrons PRK10621 LysR Feature: gene Location: 123416-124033 bp Ori: CSD52767.1 Feature: domain Description: TIGR02646 Location: 123527-123911 bp Feature: domain Description: TIGR02 646 Location: 12 352 7-12 3911 bp Feature: gene Location: 124046-125668 bp Ori: CSD52796.1 Feature: domain Description: COG3950 Location: 124232-125663 bp Feature: domain Description: COG3950 Location: 12 42 32 -12 5663 bp Feature: gene Location: 125669-126616 bp Ori: CSD52828.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125783-126380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 5783-12 6380 bp Feature: gene Location: 127102-127887 bp Ori: CSD52854.1 Gene: yfcA_1 Feature: domain Description: PRK10621 Location: 127111-127882 bp Feature: domain Description: PRK1062 1 Location: 12 7111-12 7882 bp Feature: gene Location: 127817-128677 bp Ori: CSD52890.1 Feature: domain Description: LysR Location: 127823-128651 bp Feature: domain Description: LysR Location: 12 782 3-12 8651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK10621 (hypothetical protein; Provisional), LysR (COG0583)