myRT

myRT report for GCA_001255595.1_H14060002901

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Seq: CWSY01000096.1 Shigella sonnei genome assembly H14060002901, scaffold SCcontig000096, whole genome shotgun sequence (15824 bp)
Overview 1 RT 1: 8432-14945 bp Neighborhood of RT #1 [8432, 14945] Usher_TcfC CooC_C HTH_23 HTH_33 DDE_3 RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 8432-9886 bp Ori: CSE61269.1 Gene: tsaC Feature: domain Description: Usher_TcfC Location: 8438-9488 bp Feature: domain Description: Usher_TcfC Location: 8438-9488 bp Feature: domain Description: CooC_C Location: 9506-9779 bp Feature: domain Description: CooC_C Location: 9506-9779 bp Feature: gene Location: 11417-12448 bp Ori: CSE61272.1 Feature: domain Description: HTH_23 Location: 11495-11636 bp Feature: domain Description: HTH_23 Location: 1 1 495-1 1 636 bp Feature: domain Description: HTH_33 Location: 11741-11888 bp Feature: domain Description: HTH_33 Location: 1 1 741 -1 1 888 bp Feature: domain Description: DDE_3 Location: 11948-12365 bp Feature: domain Description: DDE_3 Location: 1 1 948-1 2365 bp Feature: gene Location: 13354-13710 bp Ori: CSE61276.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13363-13684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3363-1 3684 bp Feature: gene Location: 13771-13974 bp Ori: CSE61279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13879-13969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3879-1 3969 bp Feature: gene Location: 14066-14782 bp Ori: CSE61282.1 Feature: domain Description: DDE_Tnp_1 Location: 14072-14714 bp Feature: domain Description: DDE_Tnp_1 Location: 1 4072-1 471 4 bp Feature: gene Location: 14805-14945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Usher_TcfC (pfam17271), CooC_C (pfam15976), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWSY01000005.1 Shigella sonnei genome assembly H14060002901, scaffold SCcontig000005, whole genome shotgun sequence (65453 bp)
Overview 1 RT 1: 2150-7834 bp Neighborhood of RT #1 [2150, 7884] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII COG4584 PRK09183 Feature: gene Location: 2150-3130 bp Ori: CSE47396.1 Gene: sopB Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 2 32 7-2 52 2 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 2 735-3110 bp Feature: gene Location: 3386-3871 bp Ori: CSE47402.1 Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 4160-4687 bp Ori: CSE47408.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: gene Location: 4702-5391 bp Ori: CSE47415.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: gene Location: 5915-7087 bp Ori: CSE47420.1 Feature: domain Description: COG4584 Location: 5918-6755 bp Feature: domain Description: COG4584 Location: 5918-6755 bp Feature: gene Location: 7087-7884 bp Ori: CSE47424.1 Feature: domain Description: PRK09183 Location: 7099-7834 bp Feature: domain Description: PRK09183 Location: 7099-7834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional)