myRT

myRT report for GCA_001255655.1_5236_3_3

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Seq: CXCA01000204.1 Shigella sonnei genome assembly 5236_3#3, scaffold ERS009820SCcontig000204, whole genome shotgun sequence (5775 bp)
Overview 1 RT 1: 475-3696 bp Neighborhood of RT #1 [475, 3716] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 475-1164 bp Ori: CSP31423.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676-1138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676-1 1 38 bp Feature: gene Location: 1179-1706 bp Ori: CSP31441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 85-1 329 bp Feature: domain Description: GIIM Note: maturase Location: 1407-1629 bp Feature: domain Description: GIIM Note: maturase Location: 1 407-1 629 bp Feature: gene Location: 1995-2480 bp Ori: CSP31456.1 Feature: domain Description: COG3547 Location: 2013-2445 bp Feature: domain Description: COG3547 Location: 201 3-2445 bp Feature: gene Location: 2736-3716 bp Ori: CSP31461.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2913-3108 bp Feature: domain Description: sopB_N Location: 291 3-31 08 bp Feature: domain Description: ParB Location: 3321-3696 bp Feature: domain Description: ParB Location: 3321 -3696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXCA01000213.1 Shigella sonnei genome assembly 5236_3#3, scaffold ERS009820SCcontig000213, whole genome shotgun sequence (5004 bp)
Overview 1 RT 1: 145-4456 bp Neighborhood of RT #1 [145, 4458] Tra5 RVT-GII ushA Feature: gene Location: 145-366 bp Ori: CSP32548.1 Feature: domain Description: Tra5 Location: 157-349 bp Feature: domain Description: Tra5 Location: 157-349 bp Feature: gene Location: 412-1506 bp Ori: CSP32565.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-1336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-1336 bp Feature: gene Location: 2685-2870 bp Feature: gene Location: 2839-4458 bp Ori: CSP32591.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2854-4456 bp Feature: domain Description: ushA Location: 2 854-4456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXCA01000270.1 Shigella sonnei genome assembly 5236_3#3, scaffold ERS009820SCcontig000270, whole genome shotgun sequence (3215 bp)
Overview 1 RT 1: 1253-2427 bp Neighborhood of RT #1 [1253, 2427] RVT-GII DDE_Tnp_1 Feature: gene Location: 1253-1456 bp Ori: CSP38557.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1361-1451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 61-1451 bp Feature: gene Location: 1782-2264 bp Ori: CSP38568.1 Feature: domain Description: DDE_Tnp_1 Location: 1953-2196 bp Feature: domain Description: DDE_Tnp_1 Location: 1953 -2196 bp Feature: gene Location: 2287-2427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)