myRT

myRT report for GCA_001255675.1_12850_1_50

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Seq: CWXZ01000273.1 Shigella sonnei genome assembly 12850_1#50, scaffold ERS428554SCcontig000273, whole genome shotgun sequence (3226 bp)
Overview 1 RT 1: 1366-2540 bp Neighborhood of RT #1 [1366, 2540] RVT-GII DDE_Tnp_1 Feature: gene Location: 1366-1569 bp Ori: CSL09889.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 474-1 564 bp Feature: gene Location: 1895-2377 bp Ori: CSL09894.1 Feature: domain Description: DDE_Tnp_1 Location: 2066-2309 bp Feature: domain Description: DDE_Tnp_1 Location: 2066-2309 bp Feature: gene Location: 2400-2540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWXZ01000219.1 Shigella sonnei genome assembly 12850_1#50, scaffold ERS428554SCcontig000219, whole genome shotgun sequence (4967 bp)
Overview 1 RT 1: 267-4311 bp Neighborhood of RT #1 [267, 4313] RVT-GII ushA Feature: gene Location: 267-1361 bp Ori: CSL06849.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: gene Location: 2540-2725 bp Feature: gene Location: 2694-4313 bp Ori: CSL06869.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2709-4311 bp Feature: domain Description: ushA Location: 2 709-4311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CWXZ01000206.1 Shigella sonnei genome assembly 12850_1#50, scaffold ERS428554SCcontig000206, whole genome shotgun sequence (5613 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSL05898.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: gene Location: 1268-1795 bp Ori: CSL05906.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 2084-2569 bp Ori: CSL05915.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3 547 Location: 2102-253 4 bp Feature: gene Location: 2825-3805 bp Ori: CSL05923.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3 002-3 197 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 3 410-3 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)