myRT

myRT report for GCA_001255935.1_12844_1_53

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Seq: CWXE01000281.1 Shigella sonnei genome assembly 12844_1#53, scaffold ERS428557SCcontig000281, whole genome shotgun sequence (3238 bp)
Overview 1 RT 1: 1378-2552 bp Neighborhood of RT #1 [1378, 2552] RVT-GII DDE_Tnp_1 Feature: gene Location: 1378-1581 bp Ori: CSK86689.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1486-1576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 486-1 576 bp Feature: gene Location: 1907-2389 bp Ori: CSK86703.1 Feature: domain Description: DDE_Tnp_1 Location: 2078-2321 bp Feature: domain Description: DDE_Tnp_1 Location: 2078-2321 bp Feature: gene Location: 2412-2552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWXE01000219.1 Shigella sonnei genome assembly 12844_1#53, scaffold ERS428557SCcontig000219, whole genome shotgun sequence (4846 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSK79859.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSK79894.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2 588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CWXE01000348.1 Shigella sonnei genome assembly 12844_1#53, scaffold ERS428557SCcontig000348, whole genome shotgun sequence (1599 bp)
Overview 1 RT 1: 564-1227 bp Neighborhood of RT #1 [564, 1253] RVT-GII Feature: gene Location: 564-1253 bp Ori: CSK91179.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII