myRT

myRT report for GCA_001255955.1_5417_2_9

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Seq: CXER01000204.1 Shigella sonnei genome assembly 5417_2#9, scaffold ERS008182SCcontig000204, whole genome shotgun sequence (5214 bp)
Overview 1 RT 1: 837-5133 bp Neighborhood of RT #1 [837, 5150] ushA RVT-GII Tra5 Feature: gene Location: 837-2456 bp Ori: CSS66999.1 Gene: ushA_2 Feature: domain Description: ushA Location: 852-2454 bp Feature: domain Description: ushA Location: 852-2454 bp Feature: gene Location: 2425-2610 bp Feature: gene Location: 3789-4883 bp Ori: CSS67044.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4056-4713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4056-471 3 bp Feature: gene Location: 4929-5150 bp Ori: CSS67065.1 Feature: domain Description: Tra5 Location: 4941-5133 bp Feature: domain Description: Tra5 Location: 4941 -51 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXER01000195.1 Shigella sonnei genome assembly 5417_2#9, scaffold ERS008182SCcontig000195, whole genome shotgun sequence (5795 bp)
Overview 1 RT 1: 2079-5294 bp Neighborhood of RT #1 [2079, 5320] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2079-3059 bp Ori: CSS65198.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2256-2451 bp Feature: domain Description: sopB_N Location: 2 2 56-2 451 bp Feature: domain Description: ParB Location: 2664-3039 bp Feature: domain Description: ParB Location: 2 664-3039 bp Feature: gene Location: 3315-3800 bp Ori: CSS65227.1 Feature: domain Description: COG3547 Location: 3333-3765 bp Feature: domain Description: COG3547 Location: 3333-3765 bp Feature: gene Location: 4089-4616 bp Ori: CSS65251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095-4239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095-42 39 bp Feature: domain Description: GIIM Note: maturase Location: 4317-4539 bp Feature: domain Description: GIIM Note: maturase Location: 4317-4539 bp Feature: gene Location: 4631-5320 bp Ori: CSS65271.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4832-5294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4832 -52 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXER01000002.1 Shigella sonnei genome assembly 5417_2#9, scaffold ERS008182SCcontig000002, whole genome shotgun sequence (90210 bp)
Overview 1 RT 1: 8908-12594 bp Neighborhood of RT #1 [8908, 12594] DDE_Tnp_1 RVT-GII HTH_23 HTH_33 DDE_3 Feature: gene Location: 8908-9048 bp Feature: gene Location: 9071-9553 bp Ori: CSR54573.1 Feature: domain Description: DDE_Tnp_1 Location: 9242-9485 bp Feature: domain Description: DDE_Tnp_1 Location: 9242-9485 bp Feature: gene Location: 9879-10082 bp Ori: CSR54587.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9987-10077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9987-10077 bp Feature: gene Location: 11405-12436 bp Ori: CSR54604.1 Feature: domain Description: HTH_23 Location: 11483-11624 bp Feature: domain Description: HTH_23 Location: 11483 -11624 bp Feature: domain Description: HTH_33 Location: 11729-11876 bp Feature: domain Description: HTH_3 3 Location: 11729-11876 bp Feature: domain Description: DDE_3 Location: 11936-12353 bp Feature: domain Description: DDE_3 Location: 1193 6-123 53 bp Feature: gene Location: 12442-12594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358)