myRT

myRT report for GCA_001255995.1_12850_1_48

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Seq: CWXY01000200.1 Shigella sonnei genome assembly 12850_1#48, scaffold ERS428552SCcontig000200, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 2150-5365 bp Neighborhood of RT #1 [2150, 5391] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2150-3130 bp Ori: CSL03003.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 2735-31 1 0 bp Feature: gene Location: 3386-3871 bp Ori: CSL03010.1 Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 4160-4687 bp Ori: CSL03017.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 66-431 0 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-461 0 bp Feature: gene Location: 4702-5391 bp Ori: CSL03027.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWXY01000269.1 Shigella sonnei genome assembly 12850_1#48, scaffold ERS428552SCcontig000269, whole genome shotgun sequence (3230 bp)
Overview 1 RT 1: 1370-2544 bp Neighborhood of RT #1 [1370, 2544] RVT-GII DDE_Tnp_1 Feature: gene Location: 1370-1573 bp Ori: CSL07257.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1478-1568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1478-1568 bp Feature: gene Location: 1899-2381 bp Ori: CSL07267.1 Feature: domain Description: DDE_Tnp_1 Location: 2070-2313 bp Feature: domain Description: DDE_Tnp_1 Location: 2 070-2 313 bp Feature: gene Location: 2404-2544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWXY01000210.1 Shigella sonnei genome assembly 12850_1#48, scaffold ERS428552SCcontig000210, whole genome shotgun sequence (5208 bp)
Overview 1 RT 1: 655-4951 bp Neighborhood of RT #1 [655, 4968] ushA RVT-GII Tra5 Feature: gene Location: 655-2274 bp Ori: CSL03687.1 Gene: ushA_2 Feature: domain Description: ushA Location: 670-2272 bp Feature: domain Description: ushA Location: 670-2272 bp Feature: gene Location: 2243-2428 bp Feature: gene Location: 3607-4701 bp Ori: CSL03707.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874-4531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 874-453 1 bp Feature: gene Location: 4747-4968 bp Ori: CSL03717.1 Feature: domain Description: Tra5 Location: 4759-4951 bp Feature: domain Description: Tra5 Location: 4759-4951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)