myRT

myRT report for GCA_001256075.1_12971_8_53

Download annotations/find similar RTs

Seq: CWZN01000212.1 Shigella sonnei genome assembly 12971_8#53, scaffold ERS432284SCcontig000212, whole genome shotgun sequence (5889 bp)
Overview 1 RT 1: 552-3773 bp Neighborhood of RT #1 [552, 3793] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 552-1241 bp Ori: CSN46555.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-1215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-1 21 5 bp Feature: gene Location: 1256-1783 bp Ori: CSN46564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1262-1406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 262-1 406 bp Feature: domain Description: GIIM Note: maturase Location: 1484-1706 bp Feature: domain Description: GIIM Note: maturase Location: 1 484-1 706 bp Feature: gene Location: 2072-2557 bp Ori: CSN46577.1 Feature: domain Description: COG3547 Location: 2090-2522 bp Feature: domain Description: COG3547 Location: 2090-2522 bp Feature: gene Location: 2813-3793 bp Ori: CSN46590.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2990-3185 bp Feature: domain Description: sopB_N Location: 2990-31 85 bp Feature: domain Description: ParB Location: 3398-3773 bp Feature: domain Description: ParB Location: 3398-3773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWZN01000218.1 Shigella sonnei genome assembly 12971_8#53, scaffold ERS432284SCcontig000218, whole genome shotgun sequence (5430 bp)
Overview 1 RT 1: 919-5215 bp Neighborhood of RT #1 [919, 5232] ushA RVT-GII Tra5 Feature: gene Location: 919-2538 bp Ori: CSN47407.1 Gene: ushA_2 Feature: domain Description: ushA Location: 934-2536 bp Feature: domain Description: ushA Location: 934-2 536 bp Feature: gene Location: 2507-2692 bp Feature: gene Location: 3871-4965 bp Ori: CSN47438.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4138-4795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4138-4795 bp Feature: gene Location: 5011-5232 bp Ori: CSN47457.1 Feature: domain Description: Tra5 Location: 5023-5215 bp Feature: domain Description: Tra5 Location: 502 3-52 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CWZN01000274.1 Shigella sonnei genome assembly 12971_8#53, scaffold ERS432284SCcontig000274, whole genome shotgun sequence (3334 bp)
Overview 1 RT 1: 1312-2486 bp Neighborhood of RT #1 [1312, 2486] RVT-GII DDE_Tnp_1 Feature: gene Location: 1312-1515 bp Ori: CSN54261.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1420-1510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1420-1510 bp Feature: gene Location: 1841-2323 bp Ori: CSN54280.1 Feature: domain Description: DDE_Tnp_1 Location: 2012-2255 bp Feature: domain Description: DDE_Tnp_1 Location: 2012-2255 bp Feature: gene Location: 2346-2486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)