myRT

myRT report for GCA_001256375.1_5236_2_1

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Seq: CXCG01000299.1 Shigella sonnei genome assembly 5236_2#1, scaffold ERS009806SCcontig000299, whole genome shotgun sequence (3285 bp)
Overview 1 RT 1: 787-2352 bp Neighborhood of RT #1 [787, 2378] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 787-927 bp Feature: gene Location: 950-1666 bp Ori: CSP89167.1 Feature: domain Description: DDE_Tnp_1 Location: 956-1598 bp Feature: domain Description: DDE_Tnp_1 Location: 956-1 598 bp Feature: gene Location: 1758-1961 bp Ori: CSP89173.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 866-1 956 bp Feature: gene Location: 2022-2378 bp Ori: CSP89182.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031 -2352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXCG01000211.1 Shigella sonnei genome assembly 5236_2#1, scaffold ERS009806SCcontig000211, whole genome shotgun sequence (5727 bp)
Overview 1 RT 1: 4042-5247 bp Neighborhood of RT #1 [4042, 5273] RVT-GII GIIM RVT-GII Feature: gene Location: 4042-4569 bp Ori: CSP84234.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4048-4192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4048-4192 bp Feature: domain Description: GIIM Note: maturase Location: 4270-4492 bp Feature: domain Description: GIIM Note: maturase Location: 42 70-4492 bp Feature: gene Location: 4584-5273 bp Ori: CSP84241.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4785-5247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4785-52 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CXCG01000243.1 Shigella sonnei genome assembly 5236_2#1, scaffold ERS009806SCcontig000243, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 969-4423 bp Neighborhood of RT #1 [969, 4593] ushA RVT-GII Feature: gene Location: 969-2135 bp Ori: CSP86215.1 Gene: ushA_2 Feature: domain Description: ushA Location: 972-2133 bp Feature: domain Description: ushA Location: 972-213 3 bp Feature: gene Location: 2104-2289 bp Feature: gene Location: 3499-4593 bp Ori: CSP86230.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 766-4423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII