myRT

myRT report for GCA_001256415.1_12971_8_62

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Seq: CWZQ01000215.1 Shigella sonnei genome assembly 12971_8#62, scaffold ERS432293SCcontig000215, whole genome shotgun sequence (4846 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSN25310.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3-1 070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSN25355.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-41 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CWZQ01000280.1 Shigella sonnei genome assembly 12971_8#62, scaffold ERS432293SCcontig000280, whole genome shotgun sequence (2749 bp)
Overview 1 RT 1: 1304-2478 bp Neighborhood of RT #1 [1304, 2478] RVT-GII DDE_Tnp_1 Feature: gene Location: 1304-1507 bp Ori: CSN36850.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412-1502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412 -1502 bp Feature: gene Location: 1833-2315 bp Ori: CSN36865.1 Feature: domain Description: DDE_Tnp_1 Location: 2004-2247 bp Feature: domain Description: DDE_Tnp_1 Location: 2 004-2 2 47 bp Feature: gene Location: 2338-2478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWZQ01000202.1 Shigella sonnei genome assembly 12971_8#62, scaffold ERS432293SCcontig000202, whole genome shotgun sequence (5862 bp)
Overview 1 RT 1: 2116-5331 bp Neighborhood of RT #1 [2116, 5357] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2116-3096 bp Ori: CSN22004.1 Gene: sopB Feature: domain Description: sopB_N Location: 2293-2488 bp Feature: domain Description: sopB_N Location: 2293 -2488 bp Feature: domain Description: ParB Location: 2701-3076 bp Feature: domain Description: ParB Location: 2701-3 076 bp Feature: gene Location: 3352-3837 bp Ori: CSN22060.1 Feature: domain Description: COG3547 Location: 3370-3802 bp Feature: domain Description: COG3 547 Location: 3 3 70-3 802 bp Feature: gene Location: 4126-4653 bp Ori: CSN22079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4132-4276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 2-4276 bp Feature: domain Description: GIIM Note: maturase Location: 4354-4576 bp Feature: domain Description: GIIM Note: maturase Location: 43 54-4576 bp Feature: gene Location: 4668-5357 bp Ori: CSN22103.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4869-5331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4869-53 3 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)