myRT

myRT report for GCA_001256455.1_Sg_201400526_ATCACG_L001

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Seq: CWVK01000203.1 Shigella sonnei genome assembly Sg_201400526_ATCACG_L001, scaffold SCcontig000203, whole genome shotgun sequence (5868 bp)
Overview 1 RT 1: 2106-5312 bp Neighborhood of RT #1 [2106, 5347] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2106-3086 bp Ori: CSI00842.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2283-2478 bp Feature: domain Description: sopB_N Location: 2283-2478 bp Feature: domain Description: ParB Location: 2691-3066 bp Feature: domain Description: ParB Location: 2691 -3066 bp Feature: gene Location: 3342-3827 bp Ori: CSI00859.1 Feature: domain Description: COG3547 Location: 3360-3792 bp Feature: domain Description: COG3547 Location: 3360-3792 bp Feature: gene Location: 4116-4643 bp Ori: CSI00875.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4122-4266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 22-4266 bp Feature: domain Description: GIIM Note: maturase Location: 4344-4566 bp Feature: domain Description: GIIM Note: maturase Location: 4344-4566 bp Feature: gene Location: 4658-5347 bp Ori: CSI00893.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4859-5312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4859-531 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWVK01000113.1 Shigella sonnei genome assembly Sg_201400526_ATCACG_L001, scaffold SCcontig000113, whole genome shotgun sequence (14338 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CSH80134.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 2 11-403 bp Feature: gene Location: 466-1560 bp Ori: CSH80151.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CSH80192.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2 908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CWVK01000271.1 Shigella sonnei genome assembly Sg_201400526_ATCACG_L001, scaffold SCcontig000271, whole genome shotgun sequence (3066 bp)
Overview 1 RT 1: 134-1791 bp Neighborhood of RT #1 [134, 2327] SLATT_5 RVT-UG17 Feature: gene Location: 134-301 bp Feature: gene Location: 428-979 bp Ori: CSI09544.1 Feature: domain Description: SLATT_5 Location: 434-950 bp Feature: domain Description: SLATT_5 Location: 43 4-950 bp Feature: gene Location: 957-2327 bp Ori: CSI09559.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1185-1791 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1185-1791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: CWVK01000264.1 Shigella sonnei genome assembly Sg_201400526_ATCACG_L001, scaffold SCcontig000264, whole genome shotgun sequence (3347 bp)
Overview 1 RT 1: 1314-2488 bp Neighborhood of RT #1 [1314, 2488] RVT-GII DDE_Tnp_1 Feature: gene Location: 1314-1517 bp Ori: CSI08791.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1422-1512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 22-1512 bp Feature: gene Location: 1843-2325 bp Ori: CSI08809.1 Feature: domain Description: DDE_Tnp_1 Location: 2014-2257 bp Feature: domain Description: DDE_Tnp_1 Location: 2014 -2257 bp Feature: gene Location: 2348-2488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)