myRT

myRT report for GCA_001256495.1_12844_1_56

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Seq: CWXI01000277.1 Shigella sonnei genome assembly 12844_1#56, scaffold ERS428560SCcontig000277, whole genome shotgun sequence (3235 bp)
Overview 1 RT 1: 687-1856 bp Neighborhood of RT #1 [687, 1861] DDE_Tnp_1 RVT-GII Feature: gene Location: 687-827 bp Feature: gene Location: 850-1332 bp Ori: CSK80549.1 Feature: domain Description: DDE_Tnp_1 Location: 1021-1264 bp Feature: domain Description: DDE_Tnp_1 Location: 1 021 -1 264 bp Feature: gene Location: 1658-1861 bp Ori: CSK80562.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1766-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 766-1 856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CWXI01000207.1 Shigella sonnei genome assembly 12844_1#56, scaffold ERS428560SCcontig000207, whole genome shotgun sequence (5613 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSK73007.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Ori: CSK73028.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 2084-2569 bp Ori: CSK73045.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Feature: gene Location: 2825-3805 bp Ori: CSK73058.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002 -3197 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 3410-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWXI01000220.1 Shigella sonnei genome assembly 12844_1#56, scaffold ERS428560SCcontig000220, whole genome shotgun sequence (4846 bp)
Overview 1 RT 1: 655-4531 bp Neighborhood of RT #1 [655, 4701] ushA RVT-GII Feature: gene Location: 655-2274 bp Ori: CSK74649.1 Gene: ushA_2 Feature: domain Description: ushA Location: 670-2272 bp Feature: domain Description: ushA Location: 670-2272 bp Feature: gene Location: 2243-2428 bp Feature: gene Location: 3607-4701 bp Ori: CSK74673.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874-4531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 874-453 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII