myRT

myRT report for GCA_001256555.1_5236_1_6

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Seq: CXCM01000416.1 Shigella sonnei genome assembly 5236_1#6, scaffold ERS009799SCcontig000416, whole genome shotgun sequence (1818 bp)
Overview 1 RT 1: 35-1226 bp Neighborhood of RT #1 [35, 1396] Tra5 RVT-GII Feature: gene Location: 35-256 bp Feature: domain Description: Tra5 Location: 47-239 bp Feature: domain Description: Tra5 Location: 47-239 bp Feature: gene Location: 302-1396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-1226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-1 226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tra5 (COG2801)

Seq: CXCM01000171.1 Shigella sonnei genome assembly 5236_1#6, scaffold ERS009799SCcontig000171, whole genome shotgun sequence (8376 bp)
Overview 1 RT 1: 962-4996 bp Neighborhood of RT #1 [962, 5121] RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 962-1258 bp Feature: gene Location: 2778-2975 bp Feature: gene Location: 2923-4197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2926-3508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 6-3508 bp Feature: domain Description: GIIM Note: maturase Location: 3559-3793 bp Feature: domain Description: GIIM Note: maturase Location: 3559-3793 bp Feature: domain Description: HNHc Note: nucleases Location: 4003-4162 bp Feature: domain Description: HNHc Note: nucleases Location: 4003-4162 bp Feature: gene Location: 4511-4702 bp Feature: gene Location: 4699-5121 bp Feature: domain Description: DUF1380 Location: 4702-4996 bp Feature: domain Description: DUF1380 Location: 4702 -4996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CXCM01000456.1 Shigella sonnei genome assembly 5236_1#6, scaffold ERS009799SCcontig000456, whole genome shotgun sequence (1280 bp)
Overview 1 RT 1: 455-1118 bp Neighborhood of RT #1 [455, 1144] RVT-GII Feature: gene Location: 455-1144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656-1118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656-1118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII