myRT

myRT report for GCA_001256615.1_12971_8_13

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Seq: CWXX01000211.1 Shigella sonnei genome assembly 12971_8#13, scaffold ERS432232SCcontig000211, whole genome shotgun sequence (5813 bp)
Overview 1 RT 1: 2088-5303 bp Neighborhood of RT #1 [2088, 5329] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2088-3068 bp Ori: CSK80680.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2265-2460 bp Feature: domain Description: sopB_N Location: 2265-2460 bp Feature: domain Description: ParB Location: 2673-3048 bp Feature: domain Description: ParB Location: 2673-3048 bp Feature: gene Location: 3324-3809 bp Ori: CSK80691.1 Feature: domain Description: COG3547 Location: 3342-3774 bp Feature: domain Description: COG3547 Location: 3342-3774 bp Feature: gene Location: 4098-4625 bp Ori: CSK80705.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4104-4248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 04-4248 bp Feature: domain Description: GIIM Note: maturase Location: 4326-4548 bp Feature: domain Description: GIIM Note: maturase Location: 4326-4548 bp Feature: gene Location: 4640-5329 bp Ori: CSK80718.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4841-5303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4841 -5303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWXX01000218.1 Shigella sonnei genome assembly 12971_8#13, scaffold ERS432232SCcontig000218, whole genome shotgun sequence (5229 bp)
Overview 1 RT 1: 718-5014 bp Neighborhood of RT #1 [718, 5031] ushA RVT-GII Tra5 Feature: gene Location: 718-2337 bp Ori: CSK81470.1 Gene: ushA_2 Feature: domain Description: ushA Location: 733-2335 bp Feature: domain Description: ushA Location: 733-2 335 bp Feature: gene Location: 2306-2491 bp Feature: gene Location: 3670-4764 bp Ori: CSK81486.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3937-4594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3937-4594 bp Feature: gene Location: 4810-5031 bp Ori: CSK81498.1 Feature: domain Description: Tra5 Location: 4822-5014 bp Feature: domain Description: Tra5 Location: 482 2 -5014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CWXX01000298.1 Shigella sonnei genome assembly 12971_8#13, scaffold ERS432232SCcontig000298, whole genome shotgun sequence (2698 bp)
Overview 1 RT 1: 1282-2456 bp Neighborhood of RT #1 [1282, 2456] RVT-GII DDE_Tnp_1 Feature: gene Location: 1282-1485 bp Ori: CSK87929.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1390-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 90-1480 bp Feature: gene Location: 1811-2293 bp Ori: CSK87941.1 Feature: domain Description: DDE_Tnp_1 Location: 1982-2225 bp Feature: domain Description: DDE_Tnp_1 Location: 1982-2225 bp Feature: gene Location: 2316-2456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)