myRT

myRT report for GCA_001257455.1_8290_5_5

Download annotations/find similar RTs

Seq: CXLU01000205.1 Shigella sonnei genome assembly 8290_5#5, scaffold ERS127221SCcontig000205, whole genome shotgun sequence (5914 bp)
Overview 1 RT 1: 2150-5365 bp Neighborhood of RT #1 [2150, 5391] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2150-3130 bp Ori: CTA94314.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 2735-31 1 0 bp Feature: gene Location: 3386-3871 bp Ori: CTA94325.1 Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 4160-4687 bp Ori: CTA94334.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 66-431 0 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-461 0 bp Feature: gene Location: 4702-5391 bp Ori: CTA94342.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXLU01000213.1 Shigella sonnei genome assembly 8290_5#5, scaffold ERS127221SCcontig000213, whole genome shotgun sequence (5259 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CTA94949.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 2 11-403 bp Feature: gene Location: 466-1560 bp Ori: CTA94955.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CTA94968.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2 908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXLU01000230.1 Shigella sonnei genome assembly 8290_5#5, scaffold ERS127221SCcontig000230, whole genome shotgun sequence (7167 bp)
Overview 1 RT 1: 4653-5822 bp Neighborhood of RT #1 [4653, 5827] DDE_Tnp_1 RVT-GII Feature: gene Location: 4653-4793 bp Feature: gene Location: 4816-5298 bp Ori: CTA96420.1 Feature: domain Description: DDE_Tnp_1 Location: 4987-5230 bp Feature: domain Description: DDE_Tnp_1 Location: 4987-523 0 bp Feature: gene Location: 5624-5827 bp Ori: CTA96431.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5732-5822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573 2-5822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII