myRT

myRT report for GCA_001258395.1_12850_1_46

Download annotations/find similar RTs

Seq: CWXV01000194.1 Shigella sonnei genome assembly 12850_1#46, scaffold ERS428550SCcontig000194, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSK90708.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1 227 bp Feature: gene Location: 1268-1795 bp Ori: CSK90723.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274-1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 496-1 71 8 bp Feature: gene Location: 2084-2569 bp Ori: CSK90733.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 21 02-2534 bp Feature: gene Location: 2825-3805 bp Ori: CSK90747.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002-31 97 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 341 0-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWXV01000254.1 Shigella sonnei genome assembly 12850_1#46, scaffold ERS428550SCcontig000254, whole genome shotgun sequence (3422 bp)
Overview 1 RT 1: 1369-2543 bp Neighborhood of RT #1 [1369, 2543] RVT-GII DDE_Tnp_1 Feature: gene Location: 1369-1572 bp Ori: CSK96312.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1477-1567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1477-1567 bp Feature: gene Location: 1898-2380 bp Ori: CSK96321.1 Feature: domain Description: DDE_Tnp_1 Location: 2069-2312 bp Feature: domain Description: DDE_Tnp_1 Location: 2 069-2 312 bp Feature: gene Location: 2403-2543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWXV01000207.1 Shigella sonnei genome assembly 12850_1#46, scaffold ERS428550SCcontig000207, whole genome shotgun sequence (4967 bp)
Overview 1 RT 1: 267-4311 bp Neighborhood of RT #1 [267, 4313] RVT-GII ushA Feature: gene Location: 267-1361 bp Ori: CSK92040.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 4-1191 bp Feature: gene Location: 2540-2725 bp Feature: gene Location: 2694-4313 bp Ori: CSK92067.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2709-4311 bp Feature: domain Description: ushA Location: 2709-43 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)