myRT

myRT report for GCA_001258675.1_12850_1_43

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Seq: CWXS01000203.1 Shigella sonnei genome assembly 12850_1#43, scaffold ERS428547SCcontig000203, whole genome shotgun sequence (5028 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSK65821.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3-1 070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSK65855.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-41 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CWXS01000195.1 Shigella sonnei genome assembly 12850_1#43, scaffold ERS428547SCcontig000195, whole genome shotgun sequence (5613 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSK64640.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Ori: CSK64663.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 2084-2569 bp Ori: CSK64676.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Feature: gene Location: 2825-3805 bp Ori: CSK64694.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002 -3197 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 3410-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWXS01000253.1 Shigella sonnei genome assembly 12850_1#43, scaffold ERS428547SCcontig000253, whole genome shotgun sequence (3423 bp)
Overview 1 RT 1: 880-2049 bp Neighborhood of RT #1 [880, 2054] DDE_Tnp_1 RVT-GII Feature: gene Location: 880-1020 bp Feature: gene Location: 1043-1525 bp Ori: CSK71768.1 Feature: domain Description: DDE_Tnp_1 Location: 1214-1457 bp Feature: domain Description: DDE_Tnp_1 Location: 1214-1457 bp Feature: gene Location: 1851-2054 bp Ori: CSK71781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII