myRT

myRT report for GCA_001259195.1_5236_3_8

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Seq: CXCL01000256.1 Shigella sonnei genome assembly 5236_3#8, scaffold ERS009825SCcontig000256, whole genome shotgun sequence (3227 bp)
Overview 1 RT 1: 1253-2427 bp Neighborhood of RT #1 [1253, 2427] RVT-GII DDE_Tnp_1 Feature: gene Location: 1253-1456 bp Ori: CSP79270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1361-1451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 361 -1 451 bp Feature: gene Location: 1782-2264 bp Ori: CSP79283.1 Feature: domain Description: DDE_Tnp_1 Location: 1953-2196 bp Feature: domain Description: DDE_Tnp_1 Location: 1 953-21 96 bp Feature: gene Location: 2287-2427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXCL01000194.1 Shigella sonnei genome assembly 5236_3#8, scaffold ERS009825SCcontig000194, whole genome shotgun sequence (5784 bp)
Overview 1 RT 1: 2068-5283 bp Neighborhood of RT #1 [2068, 5309] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2068-3048 bp Ori: CSP74481.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2245-2440 bp Feature: domain Description: sopB_N Location: 2 2 45-2 440 bp Feature: domain Description: ParB Location: 2653-3028 bp Feature: domain Description: ParB Location: 2 653-302 8 bp Feature: gene Location: 3304-3789 bp Ori: CSP74494.1 Feature: domain Description: COG3547 Location: 3322-3754 bp Feature: domain Description: COG3547 Location: 332 2 -3754 bp Feature: gene Location: 4078-4605 bp Ori: CSP74507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084-4228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084-42 2 8 bp Feature: domain Description: GIIM Note: maturase Location: 4306-4528 bp Feature: domain Description: GIIM Note: maturase Location: 4306-452 8 bp Feature: gene Location: 4620-5309 bp Ori: CSP74515.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4821-5283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 1-52 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXCL01000205.1 Shigella sonnei genome assembly 5236_3#8, scaffold ERS009825SCcontig000205, whole genome shotgun sequence (5357 bp)
Overview 1 RT 1: 547-5299 bp Neighborhood of RT #1 [547, 5316] ushA RVT-GII PHA02517 Feature: gene Location: 547-2166 bp Ori: CSP75347.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562-2164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSP75366.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 766-4423 bp Feature: gene Location: 4639-5316 bp Ori: CSP75376.1 Feature: domain Description: PHA02517 Location: 4654-5299 bp Feature: domain Description: PHA02517 Location: 4654-5299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)